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Selected Module: B_11_1
Module Info
| Module_Name | B_11_1 |
| Cell_Type | B |
| Name | B_11_1: CCR4-NOT complex |
| Meta_Module | B_6 |
| Gene_Number | 67 |
Genes:
AEBP2, BZW1, C9orf72, CACUL1, CEBPZ, CNOT1, CNOT2, CNOT6L, COX19, CSNK1D, CWC25, DDX21, DDX27, DNAJB6, EIF1B, ELF1, ERO1B, FBXL3, FBXO21, GGNBP2, GNA13, HBP1, ING3, INTS6, IRF2BP2, IST1, JOSD1, KLHL24, KPNA4, LRRFIP1, MMD, MOB3A, MTMR6, MXI1, NFE2L2, NFKB1, NFKB2, NUP58, PATL1, POLR1F, PPTC7, RAB21, RB1CC1, REL, RPGR, SF1, SFPQ, SIN3A, SNW1, SNX9, SRRM1, STAG2, TBC1D15, TCOF1, TGIF2, TMF1, TSC22D2, TXLNG, UBL3, USP3, WBP11, WDR48, WHAMM, WIPF2, ZBTB1, ZBTB10, ZEB1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PHF21A | 0.00316217081626448 | CSNK1D/FBXO21/MXI1/PATL1/SF1/TCOF1/WHAMM |
| ZID | 0.0122986041843241 | FBXL3/KPNA4/PPTC7/RB1CC1/SNW1/ZEB1 |
| KCCGNSWTTT | 0.0231178183020724 | SF1/SRRM1/STAG2/USP3 |
| AHR | 0.0231178183020724 | CACUL1/ING3/REL/SF1/ZEB1 |
| GCGNNANTTCC | 0.0231178183020724 | BZW1/NFKB2/SIN3A/TGIF2 |
| MZF1 | 0.0231178183020724 | GGNBP2/HBP1/PATL1/REL/ZEB1 |
| NGFIC | 0.0270274526279656 | C9orf72/CNOT6L/REL/SIN3A/WDR48 |
| CREBP1 | 0.0270274526279656 | ING3/JOSD1/TGIF2/TSC22D2/WDR48 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| hallmark | B_11_1 | HALLMARK_TNFA_SIGNALING_VIA_NFKB | HALLMARK_TNFA_SIGNALING_VIA_NFKB | 5/20 | 200/4384 | 0.00166217623866777 | 0.0349057010120232 | 0.0349057010120232 | NFE2L2/NFKB1/NFKB2/REL/ZBTB10 | 5 |
| WikiPathways | B_11_1 | WP5072 | Modulators of TCR signaling and T cell activation | 3/35 | 61/8836 | 0.00175095024775031 | 0.0340257379337623 | 0.0275136349799322 | GNA13/NFKB1/REL | 3 |
| WikiPathways | B_11_1 | WP2435 | Quercetin and Nf kB AP 1 induced apoptosis | 2/35 | 16/8836 | 0.00176655753248043 | 0.0340257379337623 | 0.0275136349799322 | NFE2L2/NFKB1 | 2 |
| WikiPathways | B_11_1 | WP4337 | ncRNAs involved in STAT3 signaling in hepatocellular carcinoma | 2/35 | 17/8836 | 0.00199712854015298 | 0.0340257379337623 | 0.0275136349799322 | NFKB1/ZEB1 | 2 |
| WikiPathways | B_11_1 | WP4329 | miRNA role in immune response in sepsis | 3/35 | 64/8836 | 0.00201061178699505 | 0.0340257379337623 | 0.0275136349799322 | NFKB1/NFKB2/REL | 3 |
| GO | B_11_1 | GO:0035770 | ribonucleoprotein granule | 5/65 | 277/19960 | 0.00207973981543448 | 0.0353555768623862 | 0.0299920373383709 | C9orf72/CNOT1/CNOT2/PATL1/USP3 | 5 |
| GO | B_11_1 | GO:0016607 | nuclear speck | 6/65 | 416/19960 | 0.00231532705251908 | 0.0357823271752949 | 0.0303540484397239 | CWC25/HBP1/PATL1/SFPQ/SNW1/SRRM1 | 6 |
| WikiPathways | B_11_1 | WP2034 | Leptin signaling | 3/35 | 71/8836 | 0.00270645882286515 | 0.040617701703081 | 0.0328439788890942 | KPNA4/NFKB1/REL | 3 |
| WikiPathways | B_11_1 | WP5331 | Autophagy in pancreatic ductal adenocarcinoma | 2/35 | 20/8836 | 0.0027693887524828 | 0.040617701703081 | 0.0328439788890942 | NFE2L2/NFKB1 | 2 |
| WikiPathways | B_11_1 | WP4961 | STING pathway in Kawasaki like disease and COVID 19 | 2/35 | 21/8836 | 0.00305331204706037 | 0.0419830406470801 | 0.0339480089442897 | NFKB1/REL | 2 |