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Selected Module: B_11_1
Module Info
| Module_Name | B_11_1 |
| Cell_Type | B |
| Name | B_11_1: CCR4-NOT complex |
| Meta_Module | B_6 |
| Gene_Number | 67 |
Genes:
AEBP2, BZW1, C9orf72, CACUL1, CEBPZ, CNOT1, CNOT2, CNOT6L, COX19, CSNK1D, CWC25, DDX21, DDX27, DNAJB6, EIF1B, ELF1, ERO1B, FBXL3, FBXO21, GGNBP2, GNA13, HBP1, ING3, INTS6, IRF2BP2, IST1, JOSD1, KLHL24, KPNA4, LRRFIP1, MMD, MOB3A, MTMR6, MXI1, NFE2L2, NFKB1, NFKB2, NUP58, PATL1, POLR1F, PPTC7, RAB21, RB1CC1, REL, RPGR, SF1, SFPQ, SIN3A, SNW1, SNX9, SRRM1, STAG2, TBC1D15, TCOF1, TGIF2, TMF1, TSC22D2, TXLNG, UBL3, USP3, WBP11, WDR48, WHAMM, WIPF2, ZBTB1, ZBTB10, ZEB1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PHF21A | 0.00316217081626448 | CSNK1D/FBXO21/MXI1/PATL1/SF1/TCOF1/WHAMM |
| ZID | 0.0122986041843241 | FBXL3/KPNA4/PPTC7/RB1CC1/SNW1/ZEB1 |
| KCCGNSWTTT | 0.0231178183020724 | SF1/SRRM1/STAG2/USP3 |
| AHR | 0.0231178183020724 | CACUL1/ING3/REL/SF1/ZEB1 |
| GCGNNANTTCC | 0.0231178183020724 | BZW1/NFKB2/SIN3A/TGIF2 |
| MZF1 | 0.0231178183020724 | GGNBP2/HBP1/PATL1/REL/ZEB1 |
| NGFIC | 0.0270274526279656 | C9orf72/CNOT6L/REL/SIN3A/WDR48 |
| CREBP1 | 0.0270274526279656 | ING3/JOSD1/TGIF2/TSC22D2/WDR48 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_11_1 | WP5120 | Inclusion body myositis | 2/35 | 11/8836 | 0.00081980417807029 | 0.0257652741679236 | 0.0208341212171248 | NFKB1/NFKB2 | 2 |
| GO | B_11_1 | GO:0016363 | nuclear matrix | 4/65 | 129/19960 | 0.0008311614587122 | 0.0235495746635124 | 0.0199770385690476 | SFPQ/SNW1/SRRM1/STAG2 | 4 |
| GO | B_11_1 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | 4/65 | 135/19960 | 0.00098457473811635 | 0.0239111007828257 | 0.0202837201687128 | CSNK1D/IST1/MTMR6/WHAMM | 4 |
| GO | B_11_1 | GO:0071933 | Arp2/3 complex binding | 2/65 | 14/18737 | 0.00104972862691935 | 0.0218395948470019 | 0.0180034707045672 | SNX9/WHAMM | 2 |
| GO | B_11_1 | GO:0008408 | 3'-5' exonuclease activity | 3/65 | 58/18737 | 0.00107295635035913 | 0.0218395948470019 | 0.0180034707045672 | CNOT1/CNOT2/CNOT6L | 3 |
| WikiPathways | B_11_1 | WP5144 | NRP1 triggered signaling in pancreatic cancer | 3/35 | 53/8836 | 0.00116464763838901 | 0.0320278100556977 | 0.025898085643124 | NFKB1/NFKB2/REL | 3 |
| GO | B_11_1 | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 3/65 | 60/18737 | 0.00118407441941576 | 0.0218395948470019 | 0.0180034707045672 | CNOT1/CNOT2/CNOT6L | 3 |
| WikiPathways | B_11_1 | WP4352 | Ciliary landscape | 5/35 | 216/8836 | 0.00148780245966491 | 0.0340257379337623 | 0.0275136349799322 | CNOT1/CNOT6L/NFKB1/RAB21/RPGR | 5 |
| GO | B_11_1 | GO:0036464 | cytoplasmic ribonucleoprotein granule | 5/65 | 258/19960 | 0.00152422611076351 | 0.0309676488488662 | 0.0262697702309267 | C9orf72/CNOT1/CNOT2/PATL1/USP3 | 5 |
| GO | B_11_1 | GO:0034399 | nuclear periphery | 4/65 | 155/19960 | 0.00163946376258703 | 0.0309676488488662 | 0.0262697702309267 | SFPQ/SNW1/SRRM1/STAG2 | 4 |