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Selected Module: B_11_1
Module Info
| Module_Name | B_11_1 |
| Cell_Type | B |
| Name | B_11_1: CCR4-NOT complex |
| Meta_Module | B_6 |
| Gene_Number | 67 |
Genes:
AEBP2, BZW1, C9orf72, CACUL1, CEBPZ, CNOT1, CNOT2, CNOT6L, COX19, CSNK1D, CWC25, DDX21, DDX27, DNAJB6, EIF1B, ELF1, ERO1B, FBXL3, FBXO21, GGNBP2, GNA13, HBP1, ING3, INTS6, IRF2BP2, IST1, JOSD1, KLHL24, KPNA4, LRRFIP1, MMD, MOB3A, MTMR6, MXI1, NFE2L2, NFKB1, NFKB2, NUP58, PATL1, POLR1F, PPTC7, RAB21, RB1CC1, REL, RPGR, SF1, SFPQ, SIN3A, SNW1, SNX9, SRRM1, STAG2, TBC1D15, TCOF1, TGIF2, TMF1, TSC22D2, TXLNG, UBL3, USP3, WBP11, WDR48, WHAMM, WIPF2, ZBTB1, ZBTB10, ZEB1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PHF21A | 0.00316217081626448 | CSNK1D/FBXO21/MXI1/PATL1/SF1/TCOF1/WHAMM |
| ZID | 0.0122986041843241 | FBXL3/KPNA4/PPTC7/RB1CC1/SNW1/ZEB1 |
| KCCGNSWTTT | 0.0231178183020724 | SF1/SRRM1/STAG2/USP3 |
| AHR | 0.0231178183020724 | CACUL1/ING3/REL/SF1/ZEB1 |
| GCGNNANTTCC | 0.0231178183020724 | BZW1/NFKB2/SIN3A/TGIF2 |
| MZF1 | 0.0231178183020724 | GGNBP2/HBP1/PATL1/REL/ZEB1 |
| NGFIC | 0.0270274526279656 | C9orf72/CNOT6L/REL/SIN3A/WDR48 |
| CREBP1 | 0.0270274526279656 | ING3/JOSD1/TGIF2/TSC22D2/WDR48 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_11_1 | WP3858 | Toll like receptor signaling related to MyD88 | 3/35 | 31/8836 | 0.00023720673260436 | 0.0173951603909869 | 0.0140659430912765 | NFKB1/NFKB2/REL | 3 |
| GO | B_11_1 | GO:0000175 | 3'-5'-RNA exonuclease activity | 3/65 | 35/18737 | 0.00024090270600364 | 0.00993738853541009 | 0.00819188655423786 | CNOT1/CNOT2/CNOT6L | 3 |
| KEGG | B_11_1 | hsa03018 | RNA degradation | 4/35 | 78/8541 | 0.0002718473557788 | 0.0315342932703412 | 0.0309047520253798 | CNOT1/CNOT2/CNOT6L/PATL1 | 4 |
| GO | B_11_1 | GO:0016896 | RNA exonuclease activity, producing 5'-phosphomonoesters | 3/65 | 38/18737 | 0.00030820810974137 | 0.00993738853541009 | 0.00819188655423786 | CNOT1/CNOT2/CNOT6L | 3 |
| GO | B_11_1 | GO:0000932 | P-body | 4/65 | 100/19960 | 0.00031765945435187 | 0.0135005268099546 | 0.0114524592753175 | C9orf72/CNOT1/CNOT2/PATL1 | 4 |
| WikiPathways | B_11_1 | WP3617 | Photodynamic therapy induced NF kB survival signaling | 3/35 | 35/8836 | 0.00034165954626296 | 0.0177501319592268 | 0.0143529775172696 | NFKB1/NFKB2/REL | 3 |
| GO | B_11_1 | GO:0004532 | RNA exonuclease activity | 3/65 | 40/18737 | 0.00035918271814735 | 0.00993738853541009 | 0.00819188655423786 | CNOT1/CNOT2/CNOT6L | 3 |
| WikiPathways | B_11_1 | WP4331 | Neovascularization processes | 3/35 | 37/8836 | 0.00040341208998242 | 0.0177501319592268 | 0.0143529775172696 | NFKB1/NFKB2/REL | 3 |
| WikiPathways | B_11_1 | WP5474 | Catabolism of skeletal muscle in cachexia | 3/35 | 40/8836 | 0.00050880535009926 | 0.0186561961703065 | 0.0150856323099607 | NFKB1/NFKB2/REL | 3 |
| GO | B_11_1 | GO:0031965 | nuclear membrane | 6/65 | 312/19960 | 0.00052927306719057 | 0.0179952842844797 | 0.0152653495168651 | C9orf72/KPNA4/NUP58/RB1CC1/TXLNG/ZBTB1 | 6 |