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Selected Module: B_11_1
Module Info
| Module_Name | B_11_1 |
| Cell_Type | B |
| Name | B_11_1: CCR4-NOT complex |
| Meta_Module | B_6 |
| Gene_Number | 67 |
Genes:
AEBP2, BZW1, C9orf72, CACUL1, CEBPZ, CNOT1, CNOT2, CNOT6L, COX19, CSNK1D, CWC25, DDX21, DDX27, DNAJB6, EIF1B, ELF1, ERO1B, FBXL3, FBXO21, GGNBP2, GNA13, HBP1, ING3, INTS6, IRF2BP2, IST1, JOSD1, KLHL24, KPNA4, LRRFIP1, MMD, MOB3A, MTMR6, MXI1, NFE2L2, NFKB1, NFKB2, NUP58, PATL1, POLR1F, PPTC7, RAB21, RB1CC1, REL, RPGR, SF1, SFPQ, SIN3A, SNW1, SNX9, SRRM1, STAG2, TBC1D15, TCOF1, TGIF2, TMF1, TSC22D2, TXLNG, UBL3, USP3, WBP11, WDR48, WHAMM, WIPF2, ZBTB1, ZBTB10, ZEB1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PHF21A | 0.00316217081626448 | CSNK1D/FBXO21/MXI1/PATL1/SF1/TCOF1/WHAMM |
| ZID | 0.0122986041843241 | FBXL3/KPNA4/PPTC7/RB1CC1/SNW1/ZEB1 |
| KCCGNSWTTT | 0.0231178183020724 | SF1/SRRM1/STAG2/USP3 |
| AHR | 0.0231178183020724 | CACUL1/ING3/REL/SF1/ZEB1 |
| GCGNNANTTCC | 0.0231178183020724 | BZW1/NFKB2/SIN3A/TGIF2 |
| MZF1 | 0.0231178183020724 | GGNBP2/HBP1/PATL1/REL/ZEB1 |
| NGFIC | 0.0270274526279656 | C9orf72/CNOT6L/REL/SIN3A/WDR48 |
| CREBP1 | 0.0270274526279656 | ING3/JOSD1/TGIF2/TSC22D2/WDR48 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_11_1 | R-HSA-6804115 | TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain | 3/46 | 20/11146 | 7.14019153769149e-05 | 0.00983697724693875 | 0.00870587325910771 | CNOT1/CNOT2/CNOT6L | 3 |
| reactome | B_11_1 | R-HSA-429914 | Deadenylation-dependent mRNA decay | 4/46 | 55/11146 | 7.42452839487821e-05 | 0.00983697724693875 | 0.00870587325910771 | CNOT1/CNOT2/CNOT6L/PATL1 | 4 |
| WikiPathways | B_11_1 | WP5272 | LDL influence on CD14 and TLR4 | 3/35 | 23/8836 | 9.55098411393167e-05 | 0.0173951603909869 | 0.0140659430912765 | NFKB1/NFKB2/REL | 3 |
| MeSH_gene2pubmed | B_11_1 | D020572 | Oncogene Proteins v-rel | 3/67 | 36/26076 | 0.00010894013042493 | 0.0455805505697914 | 0.0417642057902738 | NFKB1/NFKB2/REL | 3 |
| reactome | B_11_1 | R-HSA-429947 | Deadenylation of mRNA | 3/46 | 24/11146 | 0.00012531181206291 | 0.00983697724693875 | 0.00870587325910771 | CNOT1/CNOT2/CNOT6L | 3 |
| reactome | B_11_1 | R-HSA-9820841 | M-decay: degradation of maternal mRNAs by maternally stored factors | 3/46 | 24/11146 | 0.00012531181206291 | 0.00983697724693875 | 0.00870587325910771 | CNOT1/CNOT2/CNOT6L | 3 |
| MeSH_gene2pubmed | B_11_1 | D015682 | Retroviridae Proteins, Oncogenic | 6/67 | 307/26076 | 0.00013847525885859 | 0.0482817069220303 | 0.0442392011195618 | ELF1/GNA13/NFKB1/NFKB2/REL/WIPF2 | 6 |
| GO | B_11_1 | GO:0090543 | Flemming body | 3/65 | 34/19960 | 0.00018350941335683 | 0.011656273467526 | 0.00988798430372176 | C9orf72/IST1/USP3 | 3 |
| WikiPathways | B_11_1 | WP4674 | Head and neck squamous cell carcinoma | 4/35 | 74/8836 | 0.0001949882868443 | 0.0173951603909869 | 0.0140659430912765 | NFE2L2/NFKB1/NFKB2/REL | 4 |
| GO | B_11_1 | GO:0005635 | nuclear envelope | 8/65 | 498/19960 | 0.00020569894354457 | 0.011656273467526 | 0.00988798430372176 | C9orf72/IST1/KPNA4/MTMR6/NUP58/RB1CC1/TXLNG/ZBTB1 | 8 |