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Selected Module: B_10_7
Module Info
| Module_Name | B_10_7 |
| Cell_Type | B |
| Name | B_10_7: HALLMARK_E2F_TARGETS |
| Meta_Module | B_9 |
| Gene_Number | 55 |
Genes:
BZW2, C19orf48P, C1QBP, CARHSP1, CCT2, CCT3, CCT4, CCT6A, DDX39A, DNAJC9, DTYMK, DUT, EIF4A3, ENO1, EXOSC8, H2AZ1, HMGA1, HMGB2, HMGN2, HNRNPAB, HSP90AA1, HSPA9, HSPE1, LSM4, MCM3, MCM5, MCM7, MRTO4, NASP, NHP2, NUDC, NUDT1, PA2G4, PCNA, PSMD2, RAD51C, RAN, RANBP1, SERBP1, SIVA1, SLBP, SLC25A5, SNRNP25, SNRPB, SNRPE, SNRPF, SNRPG, SRSF3, SSRP1, STMN1, TCP1, TUBA1B, VRK1, XRCC5, YBX1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F | 3.75169733798822e-10 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/SLBP/STMN1 |
| E2F | 3.75169733798822e-10 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/RANBP1/SERBP1/SLBP/STMN1/TCP1 |
| E2F | 2.08944928636572e-09 | H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1/TCP1 |
| E2F1 | 2.08944928636572e-09 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F | 2.08944928636572e-09 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F1 | 2.08944928636572e-09 | DNAJC9/H2AZ1/HMGA1/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F1 | 2.80328444013542e-09 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/SERBP1/STMN1/TCP1 |
| E2F | 2.68835611224921e-08 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/STMN1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_7 | GO:0097525 | spliceosomal snRNP complex | 5/54 | 97/19960 | 6.39799081777758e-06 | 4.93559291657127e-05 | 2.62975061181835e-05 | LSM4/SNRPB/SNRPE/SNRPF/SNRPG | 5 |
| MeSH_gene2pubmed | B_10_7 | D055541 | DEAD Box Protein 20 | 4/54 | 59/26076 | 6.86860417101785e-06 | 0.00037710430368259 | 0.00026763618421469 | SNRPB/SNRPE/SNRPF/SNRPG | 4 |
| MeSH_gene2pubmed | B_10_7 | D003841 | Deoxycytidine | 6/54 | 224/26076 | 6.87889047877516e-06 | 0.00037710430368259 | 0.00026763618421469 | HMGA1/HSP90AA1/PCNA/STMN1/XRCC5/YBX1 | 6 |
| GO | B_10_7 | GO:0006402 | mRNA catabolic process | 8/54 | 356/18986 | 6.92705897458052e-06 | 0.00011872244292362 | 8.64480638128334e-05 | CARHSP1/EIF4A3/EXOSC8/HNRNPAB/LSM4/MRTO4/SERBP1/YBX1 | 8 |
| GO | B_10_7 | GO:0050657 | nucleic acid transport | 6/54 | 164/18986 | 6.94718579281381e-06 | 0.00011872244292362 | 8.64480638128334e-05 | DDX39A/EIF4A3/RAN/SLBP/SRSF3/YBX1 | 6 |
| GO | B_10_7 | GO:0050658 | RNA transport | 6/54 | 164/18986 | 6.94718579281381e-06 | 0.00011872244292362 | 8.64480638128334e-05 | DDX39A/EIF4A3/RAN/SLBP/SRSF3/YBX1 | 6 |
| GO | B_10_7 | GO:0140097 | catalytic activity, acting on DNA | 7/54 | 249/18737 | 6.99723041995608e-06 | 0.0001434432236091 | 9.48308859546679e-05 | HMGA1/MCM3/MCM5/MCM7/PCNA/RAD51C/XRCC5 | 7 |
| MeSH_gene2pubmed | B_10_7 | D011839 | Radiation, Ionizing | 7/54 | 346/26076 | 7.06543683847394e-06 | 0.00038242794837107 | 0.00027141444910486 | HSP90AA1/MCM3/MCM5/MCM7/PCNA/RAD51C/XRCC5 | 7 |
| GO | B_10_7 | GO:0000781 | chromosome, telomeric region | 6/54 | 173/19960 | 7.11155269263177e-06 | 5.23668880093794e-05 | 2.79017856840098e-05 | MCM3/MCM5/MCM7/NHP2/PCNA/XRCC5 | 6 |
| reactome | B_10_7 | R-HSA-69190 | DNA strand elongation | 4/45 | 32/11146 | 7.67597995093358e-06 | 0.00019445815875698 | 0.00016608845507868 | MCM3/MCM5/MCM7/PCNA | 4 |