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Selected Module: B_10_7
Module Info
| Module_Name | B_10_7 |
| Cell_Type | B |
| Name | B_10_7: HALLMARK_E2F_TARGETS |
| Meta_Module | B_9 |
| Gene_Number | 55 |
Genes:
BZW2, C19orf48P, C1QBP, CARHSP1, CCT2, CCT3, CCT4, CCT6A, DDX39A, DNAJC9, DTYMK, DUT, EIF4A3, ENO1, EXOSC8, H2AZ1, HMGA1, HMGB2, HMGN2, HNRNPAB, HSP90AA1, HSPA9, HSPE1, LSM4, MCM3, MCM5, MCM7, MRTO4, NASP, NHP2, NUDC, NUDT1, PA2G4, PCNA, PSMD2, RAD51C, RAN, RANBP1, SERBP1, SIVA1, SLBP, SLC25A5, SNRNP25, SNRPB, SNRPE, SNRPF, SNRPG, SRSF3, SSRP1, STMN1, TCP1, TUBA1B, VRK1, XRCC5, YBX1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F | 3.75169733798822e-10 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/SLBP/STMN1 |
| E2F | 3.75169733798822e-10 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/RANBP1/SERBP1/SLBP/STMN1/TCP1 |
| E2F | 2.08944928636572e-09 | H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1/TCP1 |
| E2F1 | 2.08944928636572e-09 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F | 2.08944928636572e-09 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F1 | 2.08944928636572e-09 | DNAJC9/H2AZ1/HMGA1/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F1 | 2.80328444013542e-09 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/SERBP1/STMN1/TCP1 |
| E2F | 2.68835611224921e-08 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/STMN1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_7 | D050687 | E2F1 Transcription Factor | 8/54 | 370/26076 | 8.9715952826923e-07 | 8.52500920639829e-05 | 6.05031794152092e-05 | MCM5/MCM7/PA2G4/PCNA/SIVA1/VRK1/XRCC5/YBX1 | 8 |
| GO | B_10_7 | GO:2001252 | positive regulation of chromosome organization | 6/54 | 116/18986 | 9.28605528080669e-07 | 1.97483442305156e-05 | 1.43798095810387e-05 | CCT2/CCT3/CCT4/CCT6A/HSP90AA1/TCP1 | 6 |
| WikiPathways | B_10_7 | WP4949 | 16p11 2 proximal deletion syndrome | 6/40 | 76/8836 | 1.0087196920466e-06 | 8.22794967253356e-05 | 7.11113655908718e-05 | CCT2/CCT3/CCT4/CCT6A/PCNA/TCP1 | 6 |
| GO | B_10_7 | GO:0005686 | U2 snRNP | 4/54 | 29/19960 | 1.08053812264871e-06 | 1.25033697049351e-05 | 6.66196436520257e-06 | SNRPB/SNRPE/SNRPF/SNRPG | 4 |
| MeSH_gene2pubmed | B_10_7 | D051716 | Replication Protein A | 6/54 | 163/26076 | 1.09620763311343e-06 | 0.0001018996486781 | 7.23196019740509e-05 | MCM3/MCM5/MCM7/PCNA/RAD51C/XRCC5 | 6 |
| MeSH_gene2pubmed | B_10_7 | D017414 | Ribonucleoprotein, U4-U6 Small Nuclear | 5/54 | 89/26076 | 1.14590958931225e-06 | 0.00010425339157232 | 7.3990086136332e-05 | LSM4/SNRPB/SNRPE/SNRPF/SNRPG | 5 |
| GO | B_10_7 | GO:0071007 | U2-type catalytic step 2 spliceosome | 4/54 | 30/19960 | 1.24427836799097e-06 | 1.34382063743024e-05 | 7.16005797721117e-06 | SNRPB/SNRPE/SNRPF/SNRPG | 4 |
| GO | B_10_7 | GO:0006260 | DNA replication | 8/54 | 283/18986 | 1.26782672972425e-06 | 2.63763082683937e-05 | 1.92059792923903e-05 | DUT/HMGA1/MCM3/MCM5/MCM7/NASP/PCNA/SSRP1 | 8 |
| GO | B_10_7 | GO:0000956 | nuclear-transcribed mRNA catabolic process | 6/54 | 124/18986 | 1.37344841487951e-06 | 2.79657475114828e-05 | 2.03633337211699e-05 | EIF4A3/EXOSC8/HNRNPAB/LSM4/MRTO4/YBX1 | 6 |
| reactome | B_10_7 | R-HSA-72163 | mRNA Splicing - Major Pathway | 8/45 | 207/11146 | 1.4768601129915e-06 | 4.50286914202644e-05 | 3.84594086461169e-05 | EIF4A3/LSM4/SNRPB/SNRPE/SNRPF/SNRPG/SRSF3/YBX1 | 8 |