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Selected Module: B_10_7
Module Info
| Module_Name | B_10_7 |
| Cell_Type | B |
| Name | B_10_7: HALLMARK_E2F_TARGETS |
| Meta_Module | B_9 |
| Gene_Number | 55 |
Genes:
BZW2, C19orf48P, C1QBP, CARHSP1, CCT2, CCT3, CCT4, CCT6A, DDX39A, DNAJC9, DTYMK, DUT, EIF4A3, ENO1, EXOSC8, H2AZ1, HMGA1, HMGB2, HMGN2, HNRNPAB, HSP90AA1, HSPA9, HSPE1, LSM4, MCM3, MCM5, MCM7, MRTO4, NASP, NHP2, NUDC, NUDT1, PA2G4, PCNA, PSMD2, RAD51C, RAN, RANBP1, SERBP1, SIVA1, SLBP, SLC25A5, SNRNP25, SNRPB, SNRPE, SNRPF, SNRPG, SRSF3, SSRP1, STMN1, TCP1, TUBA1B, VRK1, XRCC5, YBX1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F | 3.75169733798822e-10 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/SLBP/STMN1 |
| E2F | 3.75169733798822e-10 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/RANBP1/SERBP1/SLBP/STMN1/TCP1 |
| E2F | 2.08944928636572e-09 | H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1/TCP1 |
| E2F1 | 2.08944928636572e-09 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F | 2.08944928636572e-09 | H2AZ1/HMGA1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F1 | 2.08944928636572e-09 | DNAJC9/H2AZ1/HMGA1/MCM3/MCM7/NASP/PCNA/RANBP1/SERBP1/STMN1 |
| E2F1 | 2.80328444013542e-09 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/SERBP1/STMN1/TCP1 |
| E2F | 2.68835611224921e-08 | DNAJC9/H2AZ1/HMGN2/MCM3/MCM7/NASP/PCNA/RANBP1/STMN1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_10_7 | R-HSA-72172 | mRNA Splicing | 9/45 | 215/11146 | 1.51730440942405e-07 | 6.28991646088516e-06 | 5.37227398552057e-06 | EIF4A3/LSM4/SNRNP25/SNRPB/SNRPE/SNRPF/SNRPG/SRSF3/YBX1 | 9 |
| MeSH_gene2pubmed | B_10_7 | D009134 | Muscular Atrophy, Spinal | 7/54 | 199/26076 | 1.77322760473387e-07 | 2.52744041261401e-05 | 1.79375971384131e-05 | LSM4/RAN/SNRPB/SNRPE/SNRPF/SNRPG/SRSF3 | 7 |
| GO | B_10_7 | GO:0034719 | SMN-Sm protein complex | 4/54 | 19/19960 | 1.79907191323964e-07 | 3.23832944383135e-06 | 1.72542569456901e-06 | SNRPB/SNRPE/SNRPF/SNRPG | 4 |
| GO | B_10_7 | GO:1900180 | regulation of protein localization to nucleus | 7/54 | 146/18986 | 1.80163687257e-07 | 4.53728022907759e-06 | 3.30383271368791e-06 | CCT2/CCT3/CCT4/CCT6A/HSP90AA1/RAN/TCP1 | 7 |
| MeSH_gene2pubmed | B_10_7 | D050684 | E2F Transcription Factors | 9/54 | 425/26076 | 2.07319562941681e-07 | 2.85967242302783e-05 | 2.02954940563961e-05 | MCM5/MCM7/PA2G4/PCNA/RANBP1/SIVA1/STMN1/XRCC5/YBX1 | 9 |
| GO | B_10_7 | GO:0005684 | U2-type spliceosomal complex | 6/54 | 95/19960 | 2.12846696986177e-07 | 3.41047307428942e-06 | 1.81714614744466e-06 | EIF4A3/LSM4/SNRPB/SNRPE/SNRPF/SNRPG | 6 |
| MeSH_gene2pubmed | B_10_7 | D055532 | SMN Complex Proteins | 6/54 | 124/26076 | 2.19351470565627e-07 | 2.93108402543319e-05 | 2.08023121592336e-05 | LSM4/SNRPB/SNRPE/SNRPF/SNRPG/SRSF3 | 6 |
| GO | B_10_7 | GO:0071103 | DNA conformation change | 6/54 | 91/18986 | 2.20234570562752e-07 | 5.35007309824948e-06 | 3.89567001159451e-06 | HMGA1/HMGB2/MCM3/MCM5/MCM7/XRCC5 | 6 |
| GO | B_10_7 | GO:0022618 | protein-RNA complex assembly | 8/54 | 225/18986 | 2.23618520303008e-07 | 5.35007309824948e-06 | 3.89567001159451e-06 | HSP90AA1/LSM4/MRTO4/SNRPB/SNRPE/SNRPF/SNRPG/XRCC5 | 8 |
| GO | B_10_7 | GO:0071005 | U2-type precatalytic spliceosome | 5/54 | 50/19960 | 2.31575332204837e-07 | 3.41047307428942e-06 | 1.81714614744466e-06 | LSM4/SNRPB/SNRPE/SNRPF/SNRPG | 5 |