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Selected Module: B_10_12
Module Info
| Module_Name | B_10_12 |
| Cell_Type | B |
| Name | B_10_12: actin filament organization |
| Meta_Module | B_13 |
| Gene_Number | 50 |
Genes:
ACTB, ACTR3, ANXA6, ARHGDIB, ARL6IP5, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, BBLN, CALM2, CAP1, CAPZB, CD53, CFL1, CNN2, CORO1A, CSK, DUS2, FDFT1, HCLS1, ILK, LCP1, MTMR14, MYL12A, MYO1G, PDLIM1, PFN1, PPP1CA, PPP1R18, PRR13, PTPN6, RAC2, RGS19, RHOA, RHOG, RPS6KA1, SHKBP1, SYTL1, TADA3, TBC1D10C, TBCB, TMSB4X, TPM3, TRAPPC1, TSC22D4, TWF2, UCP2, VASP
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CAP1/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3 |
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3/VASP |
| SRF | 5.15518863810196e-08 | ACTR3/ANXA6/CAP1/CFL1/CNN2/PFN1 |
| SRF | 5.15654404051782e-08 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/PFN1/TADA3/TPM3 |
| ELK1 | 1.02349670677999e-07 | ARHGDIB/ARPC4/LCP1/PPP1CA/SYTL1/TADA3/TBC1D10C/TRAPPC1/VASP |
| SRF | 4.72727443461202e-07 | ACTB/ANXA6/ARPC4/CFL1/PFN1/TADA3/TPM3/VASP |
| ETS | 8.25848206285004e-07 | ACTR3/ARPC1B/CALM2/CAP1/CORO1A/HCLS1/LCP1/TBC1D10C |
| NERF | 1.64933095087325e-05 | ACTR3/ARHGDIB/CALM2/CAP1/CORO1A/HCLS1/PTPN6 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_12 | GO:0031032 | actomyosin structure organization | 4/48 | 216/18986 | 0.00214267753284143 | 0.0339939401839562 | 0.0263811627639022 | CNN2/PDLIM1/PFN1/RHOA | 4 |
| reactome | B_10_12 | R-HSA-6802952 | Signaling by BRAF and RAF1 fusions | 3/43 | 67/11146 | 0.00215761413418954 | 0.0213799946024237 | 0.0161046796618933 | ACTB/CALM2/CSK | 3 |
| GO | B_10_12 | GO:0031346 | positive regulation of cell projection organization | 5/48 | 363/18986 | 0.00216782325902559 | 0.0340107382416015 | 0.0263941989783116 | ACTR3/ARPC2/PFN1/RAC2/TWF2 | 5 |
| MeSH_gene2pubmed | B_10_12 | D013270 | Stomach | 5/50 | 480/26076 | 0.00221827953092768 | 0.0265585795416956 | 0.0199364003061126 | ACTB/CNN2/HCLS1/LCP1/UCP2 | 5 |
| MeSH_gene2pubmed | B_10_12 | D050721 | Proto-Oncogene Proteins c-cbl | 4/50 | 287/26076 | 0.002223107430146 | 0.0265585795416956 | 0.0199364003061126 | CSK/HCLS1/PTPN6/SHKBP1 | 4 |
| KEGG | B_10_12 | hsa04921 | Oxytocin signaling pathway | 4/31 | 155/8541 | 0.00224135563395909 | 0.0123808215971073 | 0.00865084630650876 | ACTB/CALM2/PPP1CA/RHOA | 4 |
| MeSH_gene2pubmed | B_10_12 | D009219 | Myosin-Light-Chain Kinase | 3/50 | 136/26076 | 0.00227369693593621 | 0.0270317302383527 | 0.0202915744854719 | CALM2/ILK/RHOG | 3 |
| MeSH_gene2pubmed | B_10_12 | D013107 | Sphingolipids | 3/50 | 137/26076 | 0.00232148379372696 | 0.0274671712325098 | 0.0206184415890223 | ACTR3/ANXA6/PTPN6 | 3 |
| MeSH_gene2pubmed | B_10_12 | D007545 | Isoproterenol | 4/50 | 291/26076 | 0.00233721329763097 | 0.0275209661505732 | 0.0206588231545824 | CSK/PPP1CA/RAC2/VASP | 4 |
| reactome | B_10_12 | R-HSA-3858494 | Beta-catenin independent WNT signaling | 4/43 | 146/11146 | 0.00234516397255424 | 0.0219295500146539 | 0.0165186373842879 | CALM2/PFN1/RAC2/RHOA | 4 |