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Selected Module: B_10_12
Module Info
| Module_Name | B_10_12 |
| Cell_Type | B |
| Name | B_10_12: actin filament organization |
| Meta_Module | B_13 |
| Gene_Number | 50 |
Genes:
ACTB, ACTR3, ANXA6, ARHGDIB, ARL6IP5, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, BBLN, CALM2, CAP1, CAPZB, CD53, CFL1, CNN2, CORO1A, CSK, DUS2, FDFT1, HCLS1, ILK, LCP1, MTMR14, MYL12A, MYO1G, PDLIM1, PFN1, PPP1CA, PPP1R18, PRR13, PTPN6, RAC2, RGS19, RHOA, RHOG, RPS6KA1, SHKBP1, SYTL1, TADA3, TBC1D10C, TBCB, TMSB4X, TPM3, TRAPPC1, TSC22D4, TWF2, UCP2, VASP
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CAP1/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3 |
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3/VASP |
| SRF | 5.15518863810196e-08 | ACTR3/ANXA6/CAP1/CFL1/CNN2/PFN1 |
| SRF | 5.15654404051782e-08 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/PFN1/TADA3/TPM3 |
| ELK1 | 1.02349670677999e-07 | ARHGDIB/ARPC4/LCP1/PPP1CA/SYTL1/TADA3/TBC1D10C/TRAPPC1/VASP |
| SRF | 4.72727443461202e-07 | ACTB/ANXA6/ARPC4/CFL1/PFN1/TADA3/TPM3/VASP |
| ETS | 8.25848206285004e-07 | ACTR3/ARPC1B/CALM2/CAP1/CORO1A/HCLS1/LCP1/TBC1D10C |
| NERF | 1.64933095087325e-05 | ACTR3/ARHGDIB/CALM2/CAP1/CORO1A/HCLS1/PTPN6 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_12 | GO:0032970 | regulation of actin filament-based process | 13/48 | 395/18986 | 1.122044536818e-11 | 2.26332412283859e-09 | 1.75646370350005e-09 | ARPC2/ARPC3/ARPC5/CAPZB/CNN2/CORO1A/HCLS1/PFN1/RHOA/RHOG/TMSB4X/TWF2/VASP | 13 |
| KEGG | B_10_12 | hsa05131 | Shigellosis | 12/31 | 250/8541 | 2.62083645125775e-11 | 6.08034056691798e-10 | 4.24851382624941e-10 | ACTB/ACTR3/ARPC1B/ARPC2/ARPC3/ARPC4/ARPC5/HCLS1/ILK/MYL12A/PFN1/RHOA | 12 |
| WikiPathways | B_10_12 | WP2272 | Pathogenic Escherichia coli infection | 8/35 | 55/8836 | 2.74422173935676e-11 | 4.00656373946087e-09 | 3.37972572110253e-09 | ACTB/ARPC1B/ARPC2/ARPC3/ARPC4/ARPC5/HCLS1/RHOA | 8 |
| KEGG | B_10_12 | hsa04666 | Fc gamma R-mediated phagocytosis | 9/31 | 99/8541 | 4.26249723229858e-11 | 8.24082798244392e-10 | 5.758110296263e-10 | ACTR3/ARPC1B/ARPC2/ARPC3/ARPC4/ARPC5/CFL1/RAC2/VASP | 9 |
| MeSH_gene2pubmed | B_10_12 | D009068 | Movement | 9/50 | 177/26076 | 4.91769130512795e-11 | 1.00853652515999e-08 | 7.5706563513154e-09 | ACTR3/ARPC1B/ARPC2/ARPC3/ARPC4/CFL1/PFN1/RHOG/VASP | 9 |
| GO | B_10_12 | GO:0032956 | regulation of actin cytoskeleton organization | 12/48 | 352/18986 | 5.23601437824882e-11 | 9.24156537760917e-09 | 7.17196179968029e-09 | ARPC2/ARPC3/ARPC5/CAPZB/CORO1A/HCLS1/PFN1/RHOA/RHOG/TMSB4X/TWF2/VASP | 12 |
| KEGG | B_10_12 | hsa05130 | Pathogenic Escherichia coli infection | 11/31 | 203/8541 | 5.82952359304075e-11 | 9.66035338275325e-10 | 6.74997468667877e-10 | ACTB/ACTR3/ARPC1B/ARPC2/ARPC3/ARPC4/ARPC5/HCLS1/MYO1G/PTPN6/RHOA | 11 |
| reactome | B_10_12 | R-HSA-5663213 | RHO GTPases Activate WASPs and WAVEs | 7/43 | 36/11146 | 5.8543491255855e-11 | 4.08536366650989e-09 | 3.07733815536235e-09 | ACTB/ACTR3/ARPC1B/ARPC2/ARPC3/ARPC4/ARPC5 | 7 |
| reactome | B_10_12 | R-HSA-2029482 | Regulation of actin dynamics for phagocytic cup formation | 8/43 | 61/11146 | 6.24673343503041e-11 | 4.08536366650989e-09 | 3.07733815536235e-09 | ACTB/ACTR3/ARPC1B/ARPC2/ARPC3/ARPC4/ARPC5/CFL1 | 8 |
| GO | B_10_12 | GO:0110053 | regulation of actin filament organization | 11/48 | 273/18986 | 6.2680708396251e-11 | 9.83390669505627e-09 | 7.63165116263126e-09 | ARPC2/ARPC3/ARPC5/CAPZB/CORO1A/HCLS1/PFN1/RHOA/TMSB4X/TWF2/VASP | 11 |