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Selected Module: B_10_12
Module Info
| Module_Name | B_10_12 |
| Cell_Type | B |
| Name | B_10_12: actin filament organization |
| Meta_Module | B_13 |
| Gene_Number | 50 |
Genes:
ACTB, ACTR3, ANXA6, ARHGDIB, ARL6IP5, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, BBLN, CALM2, CAP1, CAPZB, CD53, CFL1, CNN2, CORO1A, CSK, DUS2, FDFT1, HCLS1, ILK, LCP1, MTMR14, MYL12A, MYO1G, PDLIM1, PFN1, PPP1CA, PPP1R18, PRR13, PTPN6, RAC2, RGS19, RHOA, RHOG, RPS6KA1, SHKBP1, SYTL1, TADA3, TBC1D10C, TBCB, TMSB4X, TPM3, TRAPPC1, TSC22D4, TWF2, UCP2, VASP
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CAP1/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3 |
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3/VASP |
| SRF | 5.15518863810196e-08 | ACTR3/ANXA6/CAP1/CFL1/CNN2/PFN1 |
| SRF | 5.15654404051782e-08 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/PFN1/TADA3/TPM3 |
| ELK1 | 1.02349670677999e-07 | ARHGDIB/ARPC4/LCP1/PPP1CA/SYTL1/TADA3/TBC1D10C/TRAPPC1/VASP |
| SRF | 4.72727443461202e-07 | ACTB/ANXA6/ARPC4/CFL1/PFN1/TADA3/TPM3/VASP |
| ETS | 8.25848206285004e-07 | ACTR3/ARPC1B/CALM2/CAP1/CORO1A/HCLS1/LCP1/TBC1D10C |
| NERF | 1.64933095087325e-05 | ACTR3/ARHGDIB/CALM2/CAP1/CORO1A/HCLS1/PTPN6 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_10_12 | R-HSA-5663202 | Diseases of signal transduction by growth factor receptors and second messengers | 7/43 | 464/11146 | 0.00181618767200075 | 0.0191578506046531 | 0.0144308290406851 | ACTB/CALM2/CSK/PTPN6/RAC2/RHOG/TPM3 | 7 |
| MeSH_gene2pubmed | B_10_12 | D021982 | Cell-Matrix Junctions | 2/50 | 33/26076 | 0.00183160875382228 | 0.0233553841614333 | 0.0175318972618385 | CSK/ILK | 2 |
| WikiPathways | B_10_12 | WP3945 | TYROBP causal network in microglia | 3/35 | 62/8836 | 0.00183501012335798 | 0.0267911478010266 | 0.0225995983613562 | HCLS1/PPP1R18/RPS6KA1 | 3 |
| MeSH_gene2pubmed | B_10_12 | D051572 | Proto-Oncogene Proteins c-hck | 3/50 | 127/26076 | 0.00187104957371168 | 0.0237353247469301 | 0.0178171025603038 | ACTB/CSK/RAC2 | 3 |
| GO | B_10_12 | GO:0003924 | GTPase activity | 5/50 | 333/18737 | 0.00189317453574457 | 0.0338878241898278 | 0.0229173759590132 | ARHGDIB/RAC2/RGS19/RHOA/RHOG | 5 |
| MeSH_gene2pubmed | B_10_12 | D051899 | Smad2 Protein | 5/50 | 464/26076 | 0.00191438765257111 | 0.0241605539127051 | 0.0181363040769894 | ILK/PPP1CA/RAC2/RGS19/RHOA | 5 |
| GO | B_10_12 | GO:0034765 | regulation of monoatomic ion transmembrane transport | 5/48 | 354/18986 | 0.00194333958762629 | 0.0319069243921898 | 0.0247615239990082 | CALM2/CORO1A/PTPN6/TMSB4X/UCP2 | 5 |
| reactome | B_10_12 | R-HSA-373755 | Semaphorin interactions | 3/43 | 65/11146 | 0.00197788299947435 | 0.0202114919008785 | 0.0152244941406907 | CFL1/MYL12A/RHOA | 3 |
| MeSH_gene2pubmed | B_10_12 | D050199 | Podocytes | 3/50 | 130/26076 | 0.00199983915693602 | 0.0249401572493851 | 0.0187215192680215 | CSK/ILK/RHOA | 3 |
| MeSH_gene2pubmed | B_10_12 | D008027 | Light | 5/50 | 469/26076 | 0.00200584269156424 | 0.0249401572493851 | 0.0187215192680215 | ACTB/HCLS1/PDLIM1/PFN1/VASP | 5 |