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Selected Module: B_10_12
Module Info
| Module_Name | B_10_12 |
| Cell_Type | B |
| Name | B_10_12: actin filament organization |
| Meta_Module | B_13 |
| Gene_Number | 50 |
Genes:
ACTB, ACTR3, ANXA6, ARHGDIB, ARL6IP5, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, BBLN, CALM2, CAP1, CAPZB, CD53, CFL1, CNN2, CORO1A, CSK, DUS2, FDFT1, HCLS1, ILK, LCP1, MTMR14, MYL12A, MYO1G, PDLIM1, PFN1, PPP1CA, PPP1R18, PRR13, PTPN6, RAC2, RGS19, RHOA, RHOG, RPS6KA1, SHKBP1, SYTL1, TADA3, TBC1D10C, TBCB, TMSB4X, TPM3, TRAPPC1, TSC22D4, TWF2, UCP2, VASP
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CAP1/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3 |
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3/VASP |
| SRF | 5.15518863810196e-08 | ACTR3/ANXA6/CAP1/CFL1/CNN2/PFN1 |
| SRF | 5.15654404051782e-08 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/PFN1/TADA3/TPM3 |
| ELK1 | 1.02349670677999e-07 | ARHGDIB/ARPC4/LCP1/PPP1CA/SYTL1/TADA3/TBC1D10C/TRAPPC1/VASP |
| SRF | 4.72727443461202e-07 | ACTB/ANXA6/ARPC4/CFL1/PFN1/TADA3/TPM3/VASP |
| ETS | 8.25848206285004e-07 | ACTR3/ARPC1B/CALM2/CAP1/CORO1A/HCLS1/LCP1/TBC1D10C |
| NERF | 1.64933095087325e-05 | ACTR3/ARHGDIB/CALM2/CAP1/CORO1A/HCLS1/PTPN6 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_10_12 | R-HSA-9656223 | Signaling by RAF1 mutants | 3/43 | 43/11146 | 0.00059276145089829 | 0.00842752149755404 | 0.00634810890206872 | ACTB/CALM2/CSK | 3 |
| MeSH_gene2pubmed | B_10_12 | D011106 | Polyisoprenyl Phosphates | 3/50 | 86/26076 | 0.0006069240047935 | 0.0111465669835584 | 0.00836725552562928 | FDFT1/RAC2/RHOA | 3 |
| MeSH_gene2pubmed | B_10_12 | D036002 | ADP Ribose Transferases | 4/50 | 203/26076 | 0.00062055090981502 | 0.0113124132522576 | 0.00849174929220563 | ACTB/PTPN6/RHOA/RHOG | 4 |
| MeSH_gene2pubmed | B_10_12 | D007365 | Intercellular Junctions | 5/50 | 363/26076 | 0.00064443658527357 | 0.0116614590908695 | 0.0087537632132749 | CNN2/PFN1/PTPN6/RHOA/VASP | 5 |
| KEGG | B_10_12 | hsa04814 | Motor proteins | 5/31 | 197/8541 | 0.00064698550125303 | 0.00469064488408447 | 0.00327749234187391 | ACTB/CAPZB/MYL12A/MYO1G/TPM3 | 5 |
| MeSH_gene2pubmed | B_10_12 | D005782 | D005782 | 4/50 | 206/26076 | 0.00065557416938838 | 0.0117764089844147 | 0.00884005122763439 | ACTR3/PFN1/RHOA/VASP | 4 |
| WikiPathways | B_10_12 | WP185 | Integrin mediated cell adhesion | 4/35 | 102/8836 | 0.0006657411870965 | 0.0107998014795656 | 0.00911014256026799 | CSK/ILK/RAC2/VASP | 4 |
| MeSH_gene2pubmed | B_10_12 | D008301 | D008301 | 5/50 | 366/26076 | 0.00066878064063754 | 0.0117912426136678 | 0.00885118620457536 | ILK/PFN1/PTPN6/RGS19/RPS6KA1 | 5 |
| MeSH_gene2pubmed | B_10_12 | D019206 | GTP-Binding Protein alpha Subunits, Gi-Go | 5/50 | 366/26076 | 0.00066878064063754 | 0.0117912426136678 | 0.00885118620457536 | ACTB/PTPN6/RGS19/RHOA/VASP | 5 |
| MeSH_gene2pubmed | B_10_12 | D001457 | Anion Exchange Protein 1, Erythrocyte | 3/50 | 89/26076 | 0.00067077365538947 | 0.0117912426136678 | 0.00885118620457536 | CALM2/ILK/PTPN6 | 3 |