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Selected Module: B_10_12
Module Info
| Module_Name | B_10_12 |
| Cell_Type | B |
| Name | B_10_12: actin filament organization |
| Meta_Module | B_13 |
| Gene_Number | 50 |
Genes:
ACTB, ACTR3, ANXA6, ARHGDIB, ARL6IP5, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, BBLN, CALM2, CAP1, CAPZB, CD53, CFL1, CNN2, CORO1A, CSK, DUS2, FDFT1, HCLS1, ILK, LCP1, MTMR14, MYL12A, MYO1G, PDLIM1, PFN1, PPP1CA, PPP1R18, PRR13, PTPN6, RAC2, RGS19, RHOA, RHOG, RPS6KA1, SHKBP1, SYTL1, TADA3, TBC1D10C, TBCB, TMSB4X, TPM3, TRAPPC1, TSC22D4, TWF2, UCP2, VASP
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CAP1/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3 |
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3/VASP |
| SRF | 5.15518863810196e-08 | ACTR3/ANXA6/CAP1/CFL1/CNN2/PFN1 |
| SRF | 5.15654404051782e-08 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/PFN1/TADA3/TPM3 |
| ELK1 | 1.02349670677999e-07 | ARHGDIB/ARPC4/LCP1/PPP1CA/SYTL1/TADA3/TBC1D10C/TRAPPC1/VASP |
| SRF | 4.72727443461202e-07 | ACTB/ANXA6/ARPC4/CFL1/PFN1/TADA3/TPM3/VASP |
| ETS | 8.25848206285004e-07 | ACTR3/ARPC1B/CALM2/CAP1/CORO1A/HCLS1/LCP1/TBC1D10C |
| NERF | 1.64933095087325e-05 | ACTR3/ARHGDIB/CALM2/CAP1/CORO1A/HCLS1/PTPN6 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| KEGG | B_10_12 | hsa04360 | Axon guidance | 5/31 | 184/8541 | 0.00047367228972104 | 0.00366306570717604 | 0.00255949237252773 | CFL1/ILK/MYL12A/RAC2/RHOA | 5 |
| GO | B_10_12 | GO:0071801 | regulation of podosome assembly | 2/48 | 13/18986 | 0.00047959268700225 | 0.0123124522554034 | 0.00955513851041815 | LCP1/RHOA | 2 |
| GO | B_10_12 | GO:0050870 | positive regulation of T cell activation | 5/48 | 260/18986 | 0.00049061928159499 | 0.0123706147430739 | 0.00960027579211263 | ACTB/CORO1A/CSK/PTPN6/RHOA | 5 |
| WikiPathways | B_10_12 | WP3937 | Microglia pathogen phagocytosis pathway | 3/35 | 40/8836 | 0.00050880535009926 | 0.00928569763931162 | 0.00783292446863345 | ARPC1B/PTPN6/RAC2 | 3 |
| MeSH_gene2pubmed | B_10_12 | D002148 | Calmodulin-Binding Proteins | 5/50 | 347/26076 | 0.00052565452991054 | 0.0099198580954602 | 0.00744641714216842 | ACTR3/CALM2/CFL1/LCP1/TPM3 | 5 |
| MeSH_gene2pubmed | B_10_12 | D015107 | 4-Butyrolactone | 3/50 | 82/26076 | 0.00052803795632071 | 0.0099198580954602 | 0.00744641714216842 | ACTR3/ARPC2/CFL1 | 3 |
| MeSH_gene2pubmed | B_10_12 | D024462 | Myosin Type II | 3/50 | 82/26076 | 0.00052803795632071 | 0.0099198580954602 | 0.00744641714216842 | MYL12A/RHOA/TPM3 | 3 |
| MeSH_gene2pubmed | B_10_12 | D018342 | Receptors, Adrenergic, beta-1 | 3/50 | 83/26076 | 0.00054710229142828 | 0.0102001419636743 | 0.00765681436568296 | ACTB/ILK/UCP2 | 3 |
| MeSH_gene2pubmed | B_10_12 | D020890 | Neuregulin-1 | 4/50 | 198/26076 | 0.00056516526992084 | 0.0104576821750015 | 0.00785013888968015 | CFL1/ILK/PTPN6/RHOA | 4 |
| GO | B_10_12 | GO:0031333 | negative regulation of protein-containing complex assembly | 4/48 | 152/18986 | 0.0005842659960101 | 0.0144733962520397 | 0.0112321496185876 | CAPZB/PFN1/TMSB4X/TWF2 | 4 |