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Selected Module: B_10_12
Module Info
| Module_Name | B_10_12 |
| Cell_Type | B |
| Name | B_10_12: actin filament organization |
| Meta_Module | B_13 |
| Gene_Number | 50 |
Genes:
ACTB, ACTR3, ANXA6, ARHGDIB, ARL6IP5, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, BBLN, CALM2, CAP1, CAPZB, CD53, CFL1, CNN2, CORO1A, CSK, DUS2, FDFT1, HCLS1, ILK, LCP1, MTMR14, MYL12A, MYO1G, PDLIM1, PFN1, PPP1CA, PPP1R18, PRR13, PTPN6, RAC2, RGS19, RHOA, RHOG, RPS6KA1, SHKBP1, SYTL1, TADA3, TBC1D10C, TBCB, TMSB4X, TPM3, TRAPPC1, TSC22D4, TWF2, UCP2, VASP
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CAP1/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3 |
| SRF | 3.9374041695952e-11 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/LCP1/PFN1/TADA3/TPM3/VASP |
| SRF | 5.15518863810196e-08 | ACTR3/ANXA6/CAP1/CFL1/CNN2/PFN1 |
| SRF | 5.15654404051782e-08 | ACTB/ACTR3/ANXA6/ARPC4/CFL1/CNN2/PFN1/TADA3/TPM3 |
| ELK1 | 1.02349670677999e-07 | ARHGDIB/ARPC4/LCP1/PPP1CA/SYTL1/TADA3/TBC1D10C/TRAPPC1/VASP |
| SRF | 4.72727443461202e-07 | ACTB/ANXA6/ARPC4/CFL1/PFN1/TADA3/TPM3/VASP |
| ETS | 8.25848206285004e-07 | ACTR3/ARPC1B/CALM2/CAP1/CORO1A/HCLS1/LCP1/TBC1D10C |
| NERF | 1.64933095087325e-05 | ACTR3/ARHGDIB/CALM2/CAP1/CORO1A/HCLS1/PTPN6 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_12 | GO:0090734 | site of DNA damage | 5/50 | 131/19960 | 1.88565475719277e-05 | 0.0003917971551056 | 0.00023598252516915 | ACTR3/ARPC2/ARPC3/ARPC4/ARPC5 | 5 |
| MeSH_gene2pubmed | B_10_12 | D009119 | Muscle Contraction | 7/50 | 437/26076 | 1.8978139365101e-05 | 0.00074135239646847 | 0.00055650183100672 | ACTB/CALM2/ILK/PFN1/RHOA/TPM3/VASP | 7 |
| hallmark | B_10_12 | HALLMARK_PI3K_AKT_MTOR_SIGNALING | HALLMARK_PI3K_AKT_MTOR_SIGNALING | 6/25 | 105/4384 | 2.0011659884106e-05 | 0.00038022153779801 | 0.00033703848225862 | ACTR3/ARPC3/CFL1/PFN1/PPP1CA/RPS6KA1 | 6 |
| MeSH_gene2pubmed | B_10_12 | D014335 | Tropomyosin | 5/50 | 173/26076 | 2.01840772298569e-05 | 0.00077614084472934 | 0.00058261604503945 | ACTB/ACTR3/CALM2/PFN1/TPM3 | 5 |
| GO | B_10_12 | GO:0051651 | maintenance of location in cell | 6/48 | 224/18986 | 2.0462589539317e-05 | 0.00103189915819698 | 0.00080081036505372 | ANXA6/CALM2/CORO1A/PTPN6/TMSB4X/TWF2 | 6 |
| GO | B_10_12 | GO:0030837 | negative regulation of actin filament polymerization | 4/48 | 65/18986 | 2.17373161882671e-05 | 0.00105838242958045 | 0.0008213628367327 | CAPZB/PFN1/TMSB4X/TWF2 | 4 |
| MeSH_gene2pubmed | B_10_12 | D015688 | Oncogene Protein pp60(v-src) | 5/50 | 177/26076 | 2.2528151354325e-05 | 0.00085295046896913 | 0.00064027377533344 | ACTB/ACTR3/CSK/ILK/PTPN6 | 5 |
| MeSH_gene2pubmed | B_10_12 | D051419 | D051419 | 6/50 | 302/26076 | 2.37749952261746e-05 | 0.00088651914017599 | 0.00066547235441684 | CFL1/CSK/ILK/PTPN6/RHOA/VASP | 6 |
| GO | B_10_12 | GO:0098858 | actin-based cell projection | 6/50 | 234/19960 | 2.51391372285315e-05 | 0.00047010186617353 | 0.0002831460719424 | LCP1/MYO1G/SYTL1/TBC1D10C/TWF2/VASP | 6 |
| reactome | B_10_12 | R-HSA-445355 | Smooth Muscle Contraction | 4/43 | 45/11146 | 2.55037345375847e-05 | 0.00055598141291934 | 0.00041879816714349 | ANXA6/CALM2/MYL12A/TPM3 | 4 |