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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D051358 | Cyclin-Dependent Kinase 4 | 6/41 | 293/26076 | 6.17736106113323e-06 | 0.0002925279367014 | 0.00018175495278342 | BTG2/DDIT3/FOS/JUN/KLF6/SERTAD1 | 6 |
| GO | B_10_10 | GO:0048545 | response to steroid hormone | 7/41 | 340/18986 | 7.39562231573076e-06 | 0.0011182053594337 | 0.0008223283825684 | AREG/FOS/FOSB/JUN/JUNB/JUND/ZFP36 | 7 |
| MeSH_gene2pubmed | B_10_10 | D002087 | Butyrates | 6/41 | 304/26076 | 7.62323153812522e-06 | 0.00035526679041167 | 0.00022073617803794 | DDIT3/FOS/GADD45B/NR4A1/PMAIP1/ZFP36 | 6 |
| GO | B_10_10 | GO:0009612 | response to mechanical stimulus | 6/41 | 222/18986 | 7.6304516593436e-06 | 0.0011182053594337 | 0.0008223283825684 | BTG2/CXCR4/FOS/FOSB/NFKBIA/TUBA1A | 6 |
| reactome | B_10_10 | R-HSA-198725 | Nuclear Events (kinase and transcription factor activation) | 4/24 | 61/11146 | 7.9487839130992e-06 | 0.00098167481326775 | 0.0006819219883343 | FOS/FOSB/JUNB/JUND | 4 |
| MeSH_gene2pubmed | B_10_10 | D051901 | Smad4 Protein | 7/41 | 473/26076 | 8.15166974825308e-06 | 0.00037395784970111 | 0.00023234940252833 | DUSP1/FOSB/GADD45B/JUN/JUND/NFKBIA/ZFP36 | 7 |
| GO | B_10_10 | GO:0035710 | CD4-positive, alpha-beta T cell activation | 5/41 | 129/18986 | 8.25049674882326e-06 | 0.0011182053594337 | 0.0008223283825684 | CD69/CD83/JUNB/LY9/NFKBID | 5 |
| MeSH_gene2pubmed | B_10_10 | D048055 | Mitogen-Activated Protein Kinase 8 | 6/41 | 311/26076 | 8.67838362091603e-06 | 0.00039199591247706 | 0.0002435569038874 | CXCR4/DDIT3/DUSP1/JUN/JUND/PPP1R15A | 6 |
| MeSH_gene2pubmed | B_10_10 | D009153 | Mutagens | 6/41 | 312/26076 | 8.83833940127333e-06 | 0.00039317218912331 | 0.00024428775410537 | BTG2/DDIT3/DUSP1/FOS/GADD45B/PPP1R15A | 6 |
| MeSH_gene2pubmed | B_10_10 | D009856 | Oncogene Proteins, Viral | 7/41 | 484/26076 | 9.46423215992276e-06 | 0.00041413979562872 | 0.00025731545454775 | AREG/CD83/FOS/JUN/NR4A1/PPP1R15A/SERTAD1 | 7 |