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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D004307 | Dose-Response Relationship, Radiation | 4/41 | 453/26076 | 0.00547808754520692 | 0.0330260062273666 | 0.0205198869898273 | DDIT3/GADD45B/JUN/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D012983 | Soft Tissue Neoplasms | 3/41 | 228/26076 | 0.00550571169984222 | 0.0330567884473145 | 0.0205390127560576 | AREG/CD83/DDIT3 | 3 |
| MeSH_gene2pubmed | B_10_10 | D039642 | Eukaryotic Initiation Factors | 3/41 | 228/26076 | 0.00550571169984222 | 0.0330567884473145 | 0.0205390127560576 | EIF1/PPP1R15A/ZFP36 | 3 |
| WikiPathways | B_10_10 | WP408 | Oxidative stress response | 2/30 | 33/8836 | 0.0055117605196235 | 0.0263061297527485 | 0.016350677139553 | FOS/JUNB | 2 |
| WikiPathways | B_10_10 | WP4496 | Signal transduction through IL1R | 2/30 | 33/8836 | 0.0055117605196235 | 0.0263061297527485 | 0.016350677139553 | JUN/NFKBIA | 2 |
| reactome | B_10_10 | R-HSA-383280 | Nuclear Receptor transcription pathway | 2/24 | 52/11146 | 0.0055176625519078 | 0.0425894578225383 | 0.029584835393453 | NR4A1/NR4A2 | 2 |
| MeSH_gene2pubmed | B_10_10 | D015238 | Sulfotransferases | 3/41 | 229/26076 | 0.00557276049492026 | 0.033386865773993 | 0.0207440980877419 | AREG/CXCR4/SBDS | 3 |
| MeSH_gene2pubmed | B_10_10 | D015673 | Fatigue Syndrome, Chronic | 2/41 | 71/26076 | 0.00559638179044171 | 0.033386865773993 | 0.0207440980877419 | CD69/CD83 | 2 |
| MeSH_gene2pubmed | B_10_10 | D055515 | Cysteine-Rich Protein 61 | 2/41 | 71/26076 | 0.00559638179044171 | 0.033386865773993 | 0.0207440980877419 | AREG/GADD45B | 2 |
| MeSH_gene2pubmed | B_10_10 | D010980 | Platelet Membrane Glycoproteins | 4/41 | 456/26076 | 0.00560617330605536 | 0.033386865773993 | 0.0207440980877419 | CXCR4/DUSP2/FOS/JUN | 4 |