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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_10_10 | R-HSA-5683057 | MAPK family signaling cascades | 4/24 | 325/11146 | 0.00475237469685853 | 0.0378656951652922 | 0.0263034660641066 | AREG/DUSP1/DUSP2/JUN | 4 |
| MeSH_gene2pubmed | B_10_10 | D004768 | Enterotoxins | 3/41 | 217/26076 | 0.00480030936596346 | 0.0300505507430036 | 0.0186711617803045 | CD83/FOS/JUN | 3 |
| MeSH_gene2pubmed | B_10_10 | D016086 | Lentivirus | 4/41 | 437/26076 | 0.00482809974709995 | 0.0301602145903946 | 0.018739298682473 | CD83/DUSP1/NR4A1/NR4A2 | 4 |
| MeSH_gene2pubmed | B_10_10 | D051117 | Scavenger Receptors, Class A | 2/41 | 66/26076 | 0.00485468108140916 | 0.0302618761253021 | 0.0188024635469484 | CD83/KLF6 | 2 |
| KEGG | B_10_10 | hsa04926 | Relaxin signaling pathway | 3/23 | 130/8541 | 0.00488392726643789 | 0.0269677722972875 | 0.0169875731006535 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D040281 | Vascular Endothelial Growth Factor Receptor-1 | 3/41 | 219/26076 | 0.00492421356394715 | 0.0306302775926882 | 0.0190313606296173 | CXCR4/FOS/FOSB | 3 |
| MeSH_gene2pubmed | B_10_10 | D019942 | Genes, p16 | 3/41 | 220/26076 | 0.00498688655989678 | 0.0309545432132282 | 0.0192328350023392 | FOS/JUN/JUNB | 3 |
| MeSH_gene2pubmed | B_10_10 | D007509 | Irritants | 2/41 | 67/26076 | 0.00499909709880055 | 0.0309648714811781 | 0.0192392522145711 | AREG/CD83 | 2 |
| MeSH_gene2pubmed | B_10_10 | D015539 | Platelet Activation | 4/41 | 442/26076 | 0.00502529334281382 | 0.0310616026410555 | 0.0192993537132329 | CD83/DUSP2/NFKBIA/SLC2A3 | 4 |
| MeSH_gene2pubmed | B_10_10 | D017629 | Gap Junctions | 3/41 | 221/26076 | 0.00505004158328567 | 0.0311489959842998 | 0.0193536533919373 | DUSP1/FOS/NFKBIA | 3 |