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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_10_10 | WP1528 | Physiological and pathological hypertrophy of the heart | 2/30 | 24/8836 | 0.00293625751289305 | 0.0176175450773583 | 0.0109502535819169 | FOS/JUN | 2 |
| GO | B_10_10 | GO:0034976 | response to endoplasmic reticulum stress | 4/41 | 277/18986 | 0.00293723741838456 | 0.0476485181204606 | 0.0350407270965175 | DDIT3/JUN/PMAIP1/PPP1R15A | 4 |
| MeSH_gene2pubmed | B_10_10 | D042846 | CDC2-CDC28 Kinases | 4/41 | 380/26076 | 0.00293757742992434 | 0.0228167389795182 | 0.0141766128823695 | DDIT3/GADD45B/JUN/KLF6 | 4 |
| KEGG | B_10_10 | hsa04620 | Toll-like receptor signaling pathway | 3/23 | 109/8541 | 0.0029733354450676 | 0.0198744000801887 | 0.0125193071371267 | FOS/JUN/NFKBIA | 3 |
| KEGG | B_10_10 | hsa04659 | Th17 cell differentiation | 3/23 | 109/8541 | 0.0029733354450676 | 0.0198744000801887 | 0.0125193071371267 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D002358 | Cartilage, Articular | 4/41 | 382/26076 | 0.00299340036002534 | 0.0231889800977161 | 0.0144078956365058 | DUSP1/GADD45B/NR4A2/SLC2A3 | 4 |
| MeSH_gene2pubmed | B_10_10 | D001335 | Vehicle Emissions | 2/41 | 52/26076 | 0.00304305298905887 | 0.0234414799014716 | 0.0145647801051377 | AREG/CD83 | 2 |
| MeSH_gene2pubmed | B_10_10 | D015926 | Complement C3a | 2/41 | 52/26076 | 0.00304305298905887 | 0.0234414799014716 | 0.0145647801051377 | CD83/JUN | 2 |
| GO | B_10_10 | GO:0043372 | positive regulation of CD4-positive, alpha-beta T cell differentiation | 2/41 | 38/18986 | 0.00304493134491294 | 0.047907763520631 | 0.035231376201185 | CD83/NFKBID | 2 |
| GO | B_10_10 | GO:0051385 | response to mineralocorticoid | 2/41 | 38/18986 | 0.00304493134491294 | 0.047907763520631 | 0.035231376201185 | FOS/FOSB | 2 |