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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D016655 | HIV Core Protein p24 | 3/41 | 170/26076 | 0.00241933390301689 | 0.0201794441456181 | 0.0125379953765797 | CXCR4/FOS/JUN | 3 |
| GO | B_10_10 | GO:0140058 | neuron projection arborization | 2/41 | 34/18986 | 0.00244317871585288 | 0.044588011564315 | 0.0327900301338149 | PHACTR1/TUBA1A | 2 |
| MeSH_gene2pubmed | B_10_10 | D018021 | Lithium Chloride | 3/41 | 171/26076 | 0.00245986455745175 | 0.0204593834013551 | 0.0127119286657638 | CD83/DDIT3/ZFP36 | 3 |
| WikiPathways | B_10_10 | WP4482 | Vitamin D in inflammatory diseases | 2/30 | 22/8836 | 0.00246789963478664 | 0.0161955913532873 | 0.0100664327208403 | DUSP1/NFKBIA | 2 |
| MeSH_gene2pubmed | B_10_10 | D047188 | Chalcones | 2/41 | 47/26076 | 0.00249314879479341 | 0.0206776408517329 | 0.0128475375003776 | DDIT3/PMAIP1 | 2 |
| MeSH_gene2pubmed | B_10_10 | D002518 | Ceramides | 4/41 | 364/26076 | 0.00251649668535757 | 0.0208124908963657 | 0.0129313232193467 | CXCR4/DDIT3/NFKBIA/PPP1R15A | 4 |
| KEGG | B_10_10 | hsa05142 | Chagas disease | 3/23 | 103/8541 | 0.00253126418445373 | 0.0198744000801887 | 0.0125193071371267 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D004151 | Dipeptides | 4/41 | 365/26076 | 0.00254151099296354 | 0.0209016142166413 | 0.0129866977762224 | AREG/DUSP2/JUN/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D005472 | Fluorouracil | 4/41 | 365/26076 | 0.00254151099296354 | 0.0209016142166413 | 0.0129866977762224 | AREG/CD83/DDIT3/PMAIP1 | 4 |
| MeSH_gene2pubmed | B_10_10 | D015728 | Receptors, HIV | 3/41 | 174/26076 | 0.00258397945163646 | 0.0211324893314893 | 0.0131301462826154 | CD83/CXCR4/NFKBIA | 3 |