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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0002363 | alpha-beta T cell lineage commitment | 2/41 | 33/18986 | 0.00230260289562713 | 0.0426895266998807 | 0.0313938840907558 | CD69/LY9 | 2 |
| MeSH_gene2pubmed | B_10_10 | D025841 | Small Ubiquitin-Related Modifier Proteins | 4/41 | 356/26076 | 0.00232246699813455 | 0.0198219857747763 | 0.0123158975145874 | DDIT3/FOS/JUN/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D006538 | Heptanoic Acids | 3/41 | 168/26076 | 0.00233952505905188 | 0.0199082412720452 | 0.0123694902210148 | CD83/FOS/JUN | 3 |
| MeSH_gene2pubmed | B_10_10 | D010959 | Tissue Plasminogen Activator | 4/41 | 357/26076 | 0.00234613470031596 | 0.0199082412720452 | 0.0123694902210148 | DUSP1/DUSP2/FOSB/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D036541 | ADP-ribosyl Cyclase | 3/41 | 169/26076 | 0.00237922124088684 | 0.020101335340771 | 0.0124894644147269 | CD69/CD83/CXCR4 | 3 |
| MeSH_gene2pubmed | B_10_10 | D001760 | Bleeding Time | 2/41 | 46/26076 | 0.00238942984806849 | 0.020101335340771 | 0.0124894644147269 | CXCR4/DUSP2 | 2 |
| MeSH_gene2pubmed | B_10_10 | D053471 | Caspases, Initiator | 2/41 | 46/26076 | 0.00238942984806849 | 0.020101335340771 | 0.0124894644147269 | DDIT3/NR4A1 | 2 |
| KEGG | B_10_10 | hsa05417 | Lipid and atherosclerosis | 4/23 | 216/8541 | 0.0024139265173317 | 0.0198744000801887 | 0.0125193071371267 | DDIT3/FOS/JUN/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D002264 | Carboxylic Acids | 3/41 | 170/26076 | 0.00241933390301689 | 0.0201794441456181 | 0.0125379953765797 | COQ7/DDIT3/PPP1R15A | 3 |
| MeSH_gene2pubmed | B_10_10 | D003782 | Dental Pulp | 3/41 | 170/26076 | 0.00241933390301689 | 0.0201794441456181 | 0.0125379953765797 | CXCR4/FOS/JUN | 3 |