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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0071277 | cellular response to calcium ion | 5/41 | 78/18986 | 6.85991861514058e-07 | 0.00040061924712421 | 0.00029461545210288 | FOS/FOSB/JUNB/JUND/TUBA1A | 5 |
| MeSH_gene2pubmed | B_10_10 | D050976 | Basic-Leucine Zipper Transcription Factors | 7/41 | 327/26076 | 7.13138991190659e-07 | 6.34477599435083e-05 | 3.94216864986734e-05 | CXCR4/DDIT3/DUSP1/FOS/JUN/JUNB/JUND | 7 |
| MeSH_gene2pubmed | B_10_10 | D022622 | Shiga Toxin 1 | 4/41 | 46/26076 | 8.18077789232101e-07 | 7.06434232113368e-05 | 4.38925327783044e-05 | DDIT3/DUSP1/GADD45B/PPP1R15A | 4 |
| MeSH_gene2pubmed | B_10_10 | D053181 | Caspase 8 | 8/41 | 496/26076 | 8.9165285132771e-07 | 7.47969363285187e-05 | 4.64732147774713e-05 | CD83/DDIT3/DUSP1/JUN/NFKBIA/PMAIP1/SBDS/TSC22D3 | 8 |
| MeSH_gene2pubmed | B_10_10 | D017364 | Collagenases | 7/41 | 351/26076 | 1.14408962363534e-06 | 9.33068648609267e-05 | 5.79738981801183e-05 | AREG/DDIT3/FOS/GADD45B/JUN/JUNB/JUND | 7 |
| MeSH_gene2pubmed | B_10_10 | D019860 | Lymphocyte Specific Protein Tyrosine Kinase p56(lck) | 7/41 | 354/26076 | 1.21076688963287e-06 | 9.60759888638408e-05 | 5.96944244589976e-05 | CD69/CXCR4/DUSP1/FOS/JUN/LY9/NFKBIA | 7 |
| reactome | B_10_10 | R-HSA-9031628 | NGF-stimulated transcription | 4/24 | 39/11146 | 1.29309684092615e-06 | 0.00031939491970876 | 0.00022186819481154 | FOS/FOSB/JUNB/JUND | 4 |
| MeSH_gene2pubmed | B_10_10 | D015735 | Mifepristone | 6/41 | 225/26076 | 1.3488139806415e-06 | 0.00010421362755693 | 6.47505437244244e-05 | AREG/DDIT3/DUSP1/FOS/JUN/TSC22D3 | 6 |
| MeSH_gene2pubmed | B_10_10 | D003474 | Curcumin | 6/41 | 227/26076 | 1.41993798042334e-06 | 0.00010689584385956 | 6.64170720667649e-05 | BTG2/CXCR4/DDIT3/FOS/JUN/NFKBIA | 6 |
| MeSH_gene2pubmed | B_10_10 | D047488 | Retinoid X Receptors | 7/41 | 366/26076 | 1.51104632004826e-06 | 0.00011091079989154 | 6.89116650695692e-05 | DUSP1/FOS/GADD45B/JUN/JUND/NR4A1/NR4A2 | 7 |