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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D002584 | Cervix Uteri | 4/41 | 346/26076 | 0.00209480099995009 | 0.0186940295922598 | 0.011615070014121 | AREG/CD83/NR4A1/SLC2A3 | 4 |
| MeSH_gene2pubmed | B_10_10 | D011809 | D011809 | 4/41 | 347/26076 | 0.00211683935368406 | 0.01883345558308 | 0.0117016988833636 | CXCR4/DDIT3/DUSP1/FOSB | 4 |
| reactome | B_10_10 | R-HSA-2871796 | FCERI mediated MAPK activation | 2/24 | 32/11146 | 0.00211878803371121 | 0.0193829868269137 | 0.0134644229822584 | FOS/JUN | 2 |
| MeSH_gene2pubmed | B_10_10 | D053477 | Apoptotic Protease-Activating Factor 1 | 3/41 | 163/26076 | 0.00214723776176649 | 0.0190461935605632 | 0.0118338783308676 | CXCR4/DDIT3/PMAIP1 | 3 |
| MeSH_gene2pubmed | B_10_10 | D003550 | Cystic Fibrosis | 4/41 | 349/26076 | 0.00216139734231248 | 0.0191140439669561 | 0.0118760354921608 | AREG/DDIT3/JUN/SBDS | 4 |
| GO | B_10_10 | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | 2/41 | 32/18986 | 0.00216600587007345 | 0.0408047557458999 | 0.0300078232594217 | BTG2/ZFP36 | 2 |
| MeSH_gene2pubmed | B_10_10 | D000577 | Amides | 4/41 | 350/26076 | 0.00218391818334373 | 0.019205963185623 | 0.0119331472109152 | DDIT3/DUSP1/NFKBIA/NR4A1 | 4 |
| MeSH_gene2pubmed | B_10_10 | D019048 | Prostatic Intraepithelial Neoplasia | 3/41 | 164/26076 | 0.00218487455858245 | 0.019205963185623 | 0.0119331472109152 | AREG/DUSP1/PMAIP1 | 3 |
| MeSH_gene2pubmed | B_10_10 | D006566 | Herpesviridae Infections | 3/41 | 165/26076 | 0.00222292013136007 | 0.0194233089938083 | 0.0120681896193424 | CD83/CXCR4/PPP1R15A | 3 |
| MeSH_gene2pubmed | B_10_10 | D051798 | Inhibitor of Differentiation Protein 1 | 3/41 | 165/26076 | 0.00222292013136007 | 0.0194233089938083 | 0.0120681896193424 | AREG/JUNB/ZFP36 | 3 |