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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D044102 | Receptor, Melanocortin, Type 1 | 2/41 | 42/26076 | 0.00199564473098697 | 0.0181302239873035 | 0.0112647634339585 | NR4A1/NR4A2 | 2 |
| MeSH_gene2pubmed | B_10_10 | D013749 | D013749 | 3/41 | 159/26076 | 0.00200074678878962 | 0.0181302239873035 | 0.0112647634339585 | AREG/JUN/PPP1R15A | 3 |
| WikiPathways | B_10_10 | WP69 | T cell receptor signaling | 3/30 | 75/8836 | 0.00202265481236203 | 0.0138088606337515 | 0.00858295097035182 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D051785 | Smad Proteins | 4/41 | 343/26076 | 0.00202964125413402 | 0.0183354668373461 | 0.0113922859705725 | BTG2/CD83/GADD45B/JUN | 4 |
| GO | B_10_10 | GO:0043373 | CD4-positive, alpha-beta T cell lineage commitment | 2/41 | 31/18986 | 0.0020334046595714 | 0.0393866764747751 | 0.028964967558955 | CD69/LY9 | 2 |
| WikiPathways | B_10_10 | WP516 | Hypertrophy model | 2/30 | 20/8836 | 0.00203845085545856 | 0.0138088606337515 | 0.00858295097035182 | IFRD1/JUND | 2 |
| GO | B_10_10 | GO:0045444 | fat cell differentiation | 4/41 | 251/18986 | 0.00205700964465863 | 0.0393866764747751 | 0.028964967558955 | DDIT3/NR4A1/NR4A2/ZFP36 | 4 |
| MeSH_gene2pubmed | B_10_10 | D003571 | Cytochalasin B | 3/41 | 161/26076 | 0.0020731842065128 | 0.0185575269217121 | 0.0115302574771716 | CXCR4/JUN/SLC2A3 | 3 |
| MeSH_gene2pubmed | B_10_10 | D003676 | Deferoxamine | 3/41 | 161/26076 | 0.0020731842065128 | 0.0185575269217121 | 0.0115302574771716 | DDIT3/DUSP1/SLC2A3 | 3 |
| MeSH_gene2pubmed | B_10_10 | D014680 | Veins | 3/41 | 161/26076 | 0.0020731842065128 | 0.0185575269217121 | 0.0115302574771716 | DUSP1/NR4A1/NR4A2 | 3 |