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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D020405 | Dermis | 4/41 | 332/26076 | 0.00180274881545521 | 0.0170188762770948 | 0.0105742551943946 | JUN/JUNB/NFKBIA/NR4A2 | 4 |
| MeSH_gene2pubmed | B_10_10 | D052638 | Particulate Matter | 2/41 | 40/26076 | 0.00181149861674362 | 0.0170466664703823 | 0.0105915219393276 | AREG/CD83 | 2 |
| MeSH_gene2pubmed | B_10_10 | D002339 | Carotid Arteries | 4/41 | 333/26076 | 0.0018226076103231 | 0.0170964087664812 | 0.0106224280769798 | DUSP2/JUN/KLF6/NR4A1 | 4 |
| GO | B_10_10 | GO:0034612 | response to tumor necrosis factor | 4/41 | 243/18986 | 0.00182814352421183 | 0.036191044682702 | 0.0266148994782668 | FOS/NFKBIA/TUBA1A/ZFP36 | 4 |
| MeSH_gene2pubmed | B_10_10 | D019927 | D019927 | 4/41 | 334/26076 | 0.00184261813748389 | 0.0171743709576276 | 0.0106708679440588 | AREG/BTG2/DDIT3/SERTAD1 | 4 |
| MeSH_gene2pubmed | B_10_10 | D050981 | Erythroid-Specific DNA-Binding Factors | 4/41 | 334/26076 | 0.00184261813748389 | 0.0171743709576276 | 0.0106708679440588 | CXCR4/DDIT3/FOS/JUN | 4 |
| KEGG | B_10_10 | hsa04658 | Th1 and Th2 cell differentiation | 3/23 | 93/8541 | 0.00189019905263601 | 0.0187962502368579 | 0.0118401576295168 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D015452 | Precursor B-Cell Lymphoblastic Leukemia-Lymphoma | 3/41 | 156/26076 | 0.00189509280254414 | 0.0175520267137842 | 0.0109055149487265 | CXCR4/DUSP1/PMAIP1 | 3 |
| MeSH_gene2pubmed | B_10_10 | D034481 | Heterogeneous-Nuclear Ribonucleoprotein Group A-B | 3/41 | 156/26076 | 0.00189509280254414 | 0.0175520267137842 | 0.0109055149487265 | CXCR4/DDIT3/ZFP36 | 3 |
| reactome | B_10_10 | R-HSA-168179 | Toll Like Receptor TLR1:TLR2 Cascade | 3/24 | 116/11146 | 0.00189545026058279 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |