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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| KEGG | B_10_10 | hsa05235 | PD-L1 expression and PD-1 checkpoint pathway in cancer | 3/23 | 90/8541 | 0.00172026768267169 | 0.0187962502368579 | 0.0118401576295168 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D005949 | Glucose Oxidase | 2/41 | 39/26076 | 0.00172263528348028 | 0.0164616128012106 | 0.0102280134033049 | BTG2/PPP1R15A | 2 |
| MeSH_gene2pubmed | B_10_10 | D020781 | Matrix Metalloproteinase 1 | 4/41 | 328/26076 | 0.00172481875796553 | 0.0164616128012106 | 0.0102280134033049 | AREG/FOS/FOSB/JUN | 4 |
| MeSH_gene2pubmed | B_10_10 | D008263 | Macrophage Migration-Inhibitory Factors | 3/41 | 151/26076 | 0.00172689943554934 | 0.0164616128012106 | 0.0102280134033049 | CXCR4/DUSP1/NFKBIA | 3 |
| reactome | B_10_10 | R-HSA-166058 | MyD88:MAL(TIRAP) cascade initiated on plasma membrane | 3/24 | 113/11146 | 0.00175836398291871 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| reactome | B_10_10 | R-HSA-168188 | Toll Like Receptor TLR6:TLR2 Cascade | 3/24 | 113/11146 | 0.00175836398291871 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| KEGG | B_10_10 | hsa04662 | B cell receptor signaling pathway | 3/23 | 91/8541 | 0.00177579530692586 | 0.0187962502368579 | 0.0118401576295168 | FOS/JUN/NFKBIA | 3 |
| GO | B_10_10 | GO:0070935 | 3'-UTR-mediated mRNA stabilization | 2/41 | 29/18986 | 0.00178025802489457 | 0.0358507133289114 | 0.0263646197516147 | RBM38/ZFP36 | 2 |
| MeSH_gene2pubmed | B_10_10 | D000957 | Antigens, Viral, Tumor | 3/41 | 153/26076 | 0.00179300222934064 | 0.0169814662753036 | 0.0105510114208738 | AREG/FOS/JUN | 3 |
| MeSH_gene2pubmed | B_10_10 | D044169 | Receptors, Calcium-Sensing | 3/41 | 153/26076 | 0.00179300222934064 | 0.0169814662753036 | 0.0105510114208738 | CD83/DDIT3/TUBA1A | 3 |