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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D008466 | Mechlorethamine | 2/41 | 38/26076 | 0.00163592061005299 | 0.015851692775959 | 0.00984905477582711 | DDIT3/DUSP1 | 2 |
| WikiPathways | B_10_10 | WP2880 | Glucocorticoid receptor pathway | 3/30 | 70/8836 | 0.00165852775503541 | 0.0128996603169421 | 0.00801783398145775 | GADD45B/JUN/TSC22D3 | 3 |
| WikiPathways | B_10_10 | WP5130 | Th17 cell differentiation pathway | 3/30 | 70/8836 | 0.00165852775503541 | 0.0128996603169421 | 0.00801783398145775 | FOS/JUN/NFKBIA | 3 |
| GO | B_10_10 | GO:0002295 | T-helper cell lineage commitment | 2/41 | 28/18986 | 0.00165974690154182 | 0.0340102522982604 | 0.0250111444442867 | CD69/LY9 | 2 |
| MeSH_gene2pubmed | B_10_10 | D005755 | Gastrins | 3/41 | 149/26076 | 0.0016623470179743 | 0.0160547725156992 | 0.00997523331769205 | AREG/FOS/JUN | 3 |
| reactome | B_10_10 | R-HSA-166166 | MyD88-independent TLR4 cascade | 3/24 | 111/11146 | 0.00167053918082821 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| reactome | B_10_10 | R-HSA-168138 | Toll Like Receptor 9 (TLR9) Cascade | 3/24 | 111/11146 | 0.00167053918082821 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| reactome | B_10_10 | R-HSA-937061 | TRIF (TICAM1)-mediated TLR4 signaling | 3/24 | 111/11146 | 0.00167053918082821 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| KEGG | B_10_10 | hsa05167 | Kaposi sarcoma-associated herpesvirus infection | 4/23 | 196/8541 | 0.00169131416072836 | 0.0187962502368579 | 0.0118401576295168 | FOS/JUN/NFKBIA/ZFP36 | 4 |
| MeSH_gene2pubmed | B_10_10 | D016662 | Virus Integration | 4/41 | 327/26076 | 0.00170570947068935 | 0.0164195508391604 | 0.0102018792500591 | CD83/FOS/JUN/NR4A1 | 4 |