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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0002285 | lymphocyte activation involved in immune response | 4/41 | 227/18986 | 0.00142464480461474 | 0.0303878599713202 | 0.0223472366047199 | CD69/JUNB/LY9/NFKBID | 4 |
| GO | B_10_10 | GO:0021542 | dentate gyrus development | 2/41 | 26/18986 | 0.00143093518700566 | 0.0303878599713202 | 0.0223472366047199 | BTG2/TUBA1A | 2 |
| reactome | B_10_10 | R-HSA-168164 | Toll Like Receptor 3 (TLR3) Cascade | 3/24 | 106/11146 | 0.00146320857301482 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D015008 | Yersinia enterocolitica | 2/41 | 36/26076 | 0.0014689638627195 | 0.0148208862575411 | 0.00920858880120417 | CD83/NFKBIA | 2 |
| MeSH_gene2pubmed | B_10_10 | D036563 | Cyclic ADP-Ribose | 2/41 | 36/26076 | 0.0014689638627195 | 0.0148208862575411 | 0.00920858880120417 | DDIT3/DUSP1 | 2 |
| MeSH_gene2pubmed | B_10_10 | D015483 | HIV Antibodies | 3/41 | 143/26076 | 0.00147785485872345 | 0.0148595269356577 | 0.00923259722482965 | CXCR4/FOS/JUN | 3 |
| MeSH_gene2pubmed | B_10_10 | D019402 | Macrophage Inflammatory Proteins | 4/41 | 315/26076 | 0.00148777212867745 | 0.0149081876102287 | 0.00926283132386573 | AREG/CD83/CXCR4/JUN | 4 |
| GO | B_10_10 | GO:0042594 | response to starvation | 4/41 | 230/18986 | 0.00149500929161809 | 0.0311816223680344 | 0.0229309695857211 | DDIT3/FOS/PMAIP1/ZFP36 | 4 |
| MeSH_gene2pubmed | B_10_10 | D015686 | Gene Products, env | 4/41 | 316/26076 | 0.00150514504818816 | 0.0150309723179607 | 0.00933912054604398 | CXCR4/FOS/JUN/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D003342 | Corpus Striatum | 4/41 | 317/26076 | 0.00152265928879566 | 0.0151543310912002 | 0.00941576644953746 | CCNL1/NR4A1/NR4A2/SLC2A3 | 4 |