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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0045619 | regulation of lymphocyte differentiation | 4/41 | 223/18986 | 0.00133447577148891 | 0.0294088245490387 | 0.0216272538140011 | CD69/CD83/JUNB/NFKBID | 4 |
| MeSH_gene2pubmed | B_10_10 | D006377 | T-Lymphocytes, Helper-Inducer | 4/41 | 306/26076 | 0.0013376737544068 | 0.0137322032969873 | 0.00853216273973865 | CD83/CXCR4/JUNB/PPP1R15A | 4 |
| MeSH_gene2pubmed | B_10_10 | D035181 | TATA-Box Binding Protein | 4/41 | 306/26076 | 0.0013376737544068 | 0.0137322032969873 | 0.00853216273973865 | DUSP1/FOS/IFRD1/JUN | 4 |
| reactome | B_10_10 | R-HSA-975138 | TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation | 3/24 | 103/11146 | 0.00134702187637033 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| hallmark | B_10_10 | HALLMARK_MTORC1_SIGNALING | HALLMARK_MTORC1_SIGNALING | 6/28 | 200/4384 | 0.00135611349055183 | 0.00678056745275915 | 0.0042824636543742 | BTG2/CXCR4/DDIT3/IFRD1/PPP1R15A/SLC2A3 | 6 |
| MeSH_gene2pubmed | B_10_10 | D044464 | Receptor, PAR-2 | 3/41 | 139/26076 | 0.00136235762678619 | 0.0139368710531158 | 0.00865932795606258 | AREG/FOS/JUN | 3 |
| MeSH_gene2pubmed | B_10_10 | D010936 | Plant Extracts | 4/41 | 308/26076 | 0.00137006699454529 | 0.0139670718610589 | 0.00867809247641441 | CD83/DDIT3/DUSP1/PMAIP1 | 4 |
| reactome | B_10_10 | R-HSA-975155 | MyD88 dependent cascade initiated on endosome | 3/24 | 104/11146 | 0.00138507688683246 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| GO | B_10_10 | GO:0070412 | R-SMAD binding | 2/40 | 26/18737 | 0.00139813322212962 | 0.0158433062735845 | 0.0111618817509713 | FOS/JUN | 2 |
| MeSH_gene2pubmed | B_10_10 | D048669 | MAP Kinase Kinase 6 | 3/41 | 141/26076 | 0.00141936596230487 | 0.0144195794647997 | 0.00895924681360168 | CD83/DUSP1/JUN | 3 |