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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0072540 | T-helper 17 cell lineage commitment | 2/41 | 24/18986 | 0.00121851965352043 | 0.0279064893198405 | 0.0205224362698179 | CD69/LY9 | 2 |
| MeSH_gene2pubmed | B_10_10 | D011940 | Receptor Aggregation | 4/41 | 299/26076 | 0.00122852260357626 | 0.0129746128205032 | 0.0080614527527363 | AREG/CD69/CXCR4/LY9 | 4 |
| MeSH_gene2pubmed | B_10_10 | D055550 | Protein Stability | 2/41 | 33/26076 | 0.0012348104528658 | 0.012994277740552 | 0.00807367106137121 | CD69/PPP1R15A | 2 |
| MeSH_gene2pubmed | B_10_10 | D035362 | Transcription Factor TFIID | 4/41 | 301/26076 | 0.00125904518270477 | 0.0132019880586471 | 0.00820272669784723 | FOS/IFRD1/JUN/JUND | 4 |
| MeSH_gene2pubmed | B_10_10 | D002525 | Cerebellar Cortex | 3/41 | 136/26076 | 0.00127958949635595 | 0.0133696610722458 | 0.00830690615165709 | BTG2/CXCR4/DDIT3 | 3 |
| MeSH_gene2pubmed | B_10_10 | D050956 | HSP40 Heat-Shock Proteins | 4/41 | 303/26076 | 0.00129009606340121 | 0.0134316384473261 | 0.00834541425111723 | DDIT3/JUN/JUND/PPP1R15A | 4 |
| WikiPathways | B_10_10 | WP4928 | MAPK pathway in congenital thyroid cancer | 2/30 | 16/8836 | 0.00129835117165825 | 0.0109061498419293 | 0.00677875980149992 | FOS/JUN | 2 |
| MeSH_gene2pubmed | B_10_10 | D010442 | Peptide Chain Initiation, Translational | 4/41 | 304/26076 | 0.00130582116049916 | 0.0135473177640479 | 0.0084172887154363 | DDIT3/EIF1/PPP1R15A/ZFP36 | 4 |
| MeSH_gene2pubmed | B_10_10 | D048292 | Mitogen-Activated Protein Kinase 13 | 2/41 | 34/26076 | 0.00131068176225383 | 0.0135498649787931 | 0.00841887136392098 | DDIT3/DUSP1 | 2 |
| GO | B_10_10 | GO:0035994 | response to muscle stretch | 2/41 | 25/18986 | 0.00132266921093463 | 0.0294088245490387 | 0.0216272538140011 | FOS/NFKBIA | 2 |