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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D016356 | Gene Products, tax | 7/41 | 275/26076 | 2.2244342351986e-07 | 2.61237556581724e-05 | 1.6231345387786e-05 | CXCR4/FOS/JUN/NFKBIA/PMAIP1/SERTAD1/ZFP36 | 7 |
| MeSH_gene2pubmed | B_10_10 | D050807 | ets-Domain Protein Elk-1 | 7/41 | 275/26076 | 2.2244342351986e-07 | 2.61237556581724e-05 | 1.6231345387786e-05 | AREG/DDIT3/DUSP1/FOS/JUN/JUNB/JUND | 7 |
| MeSH_gene2pubmed | B_10_10 | D019319 | Okadaic Acid | 8/41 | 446/26076 | 4.00788262875804e-07 | 4.52582438385908e-05 | 2.81200833831485e-05 | AREG/DUSP1/EIF1/FOSB/IER2/JUN/NFKBIA/PPP1R15A | 8 |
| MeSH_gene2pubmed | B_10_10 | D000841 | Anisomycin | 6/41 | 187/26076 | 4.58089917608002e-07 | 4.89811647903736e-05 | 3.04332276572915e-05 | DUSP1/DUSP2/FOS/JUN/JUND/NR4A1 | 6 |
| MeSH_gene2pubmed | B_10_10 | D015682 | Retroviridae Proteins, Oncogenic | 7/41 | 307/26076 | 4.67122824976315e-07 | 4.89811647903736e-05 | 3.04332276572915e-05 | DUSP1/FOS/JUN/JUNB/JUND/NFKBIA/TUBA1A | 7 |
| MeSH_gene2pubmed | B_10_10 | D048688 | MAP Kinase Kinase 7 | 5/41 | 102/26076 | 5.55846477388097e-07 | 5.51655316413725e-05 | 3.42757300783373e-05 | DUSP1/FOS/GADD45B/JUN/NR4A1 | 5 |
| MeSH_gene2pubmed | B_10_10 | D019324 | beta-Naphthoflavone | 4/41 | 42/26076 | 5.63680500422743e-07 | 5.51655316413725e-05 | 3.42757300783373e-05 | FOS/JUN/JUNB/JUND | 4 |
| MeSH_gene2pubmed | B_10_10 | D018053 | D018053 | 6/41 | 196/26076 | 6.03337903803176e-07 | 5.71419382440685e-05 | 3.55037211304212e-05 | DDIT3/DUSP1/FOS/GADD45B/JUN/ZFP36 | 6 |
| WikiPathways | B_10_10 | WP5373 | Osteoarthritic chondrocyte hypertrophy | 5/30 | 50/8836 | 6.05509181834529e-07 | 6.35784640926256e-05 | 3.95174413407798e-05 | FOS/FOSB/JUN/JUNB/JUND | 5 |
| MeSH_gene2pubmed | B_10_10 | D008262 | Macrophage Activation | 8/41 | 473/26076 | 6.24279185394796e-07 | 5.72776152599726e-05 | 3.55880206674073e-05 | CD83/CXCR4/DUSP1/JUN/JUND/NFKBIA/SLC2A3/ZFP36 | 8 |