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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_10_10 | R-HSA-168142 | Toll Like Receptor 10 (TLR10) Cascade | 3/24 | 97/11146 | 0.00113255474799253 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| reactome | B_10_10 | R-HSA-168176 | Toll Like Receptor 5 (TLR5) Cascade | 3/24 | 97/11146 | 0.00113255474799253 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| reactome | B_10_10 | R-HSA-975871 | MyD88 cascade initiated on plasma membrane | 3/24 | 97/11146 | 0.00113255474799253 | 0.0187270485745579 | 0.0130087744199998 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D018375 | Neutrophil Activation | 4/41 | 293/26076 | 0.0011400752556187 | 0.0121718580018055 | 0.00756268102578837 | AREG/CD83/JUN/NFKBIA | 4 |
| MeSH_gene2pubmed | B_10_10 | D051195 | Toll-Like Receptor 2 | 4/41 | 294/26076 | 0.00115449504437555 | 0.0122811501821979 | 0.00763058700191772 | CD83/CXCR4/DUSP1/TSC22D3 | 4 |
| WikiPathways | B_10_10 | WP3863 | T cell antigen receptor TCR pathway during Staphylococcus aureus infection | 3/30 | 62/8836 | 0.00116702567654232 | 0.0102114746697453 | 0.00634698174961615 | FOS/JUN/NFKBIA | 3 |
| KEGG | B_10_10 | hsa05140 | Leishmaniasis | 3/23 | 79/8541 | 0.0011805248307663 | 0.018740831688415 | 0.011805248307663 | FOS/JUN/NFKBIA | 3 |
| GO | B_10_10 | GO:0019957 | C-C chemokine binding | 2/40 | 24/18737 | 0.00119054586155937 | 0.015119932441804 | 0.0106522524455312 | CXCR4/ZFP36 | 2 |
| reactome | B_10_10 | R-HSA-9634638 | Estrogen-dependent nuclear events downstream of ESR-membrane signaling | 2/24 | 24/11146 | 0.0011914588244272 | 0.0187270485745579 | 0.0130087744199998 | AREG/FOS | 2 |
| MeSH_gene2pubmed | B_10_10 | D019859 | Proto-Oncogene Proteins c-met | 4/41 | 297/26076 | 0.00119852338474566 | 0.0127034825184594 | 0.0078929926876847 | AREG/CXCR4/JUN/JUNB | 4 |