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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0140297 | DNA-binding transcription factor binding | 6/40 | 488/18737 | 0.00054768606582574 | 0.00869451629498376 | 0.00612543626252482 | DDIT3/FOS/JUN/NFKBIA/NR4A1/NR4A2 | 6 |
| MeSH_gene2pubmed | B_10_10 | D020710 | RGS Proteins | 4/41 | 241/26076 | 0.00055097199576715 | 0.00745462571231501 | 0.00463174614923344 | CXCR4/DUSP1/NFKBIA/ZFP36 | 4 |
| WikiPathways | B_10_10 | WP5347 | IL26 signaling | 3/30 | 48/8836 | 0.00055107660955174 | 0.00674780753720451 | 0.00419412598803689 | DDIT3/JUN/NFKBIA | 3 |
| WikiPathways | B_10_10 | WP2882 | Nuclear receptors meta pathway | 6/30 | 314/8836 | 0.00055369322626992 | 0.00674780753720451 | 0.00419412598803689 | GADD45B/JUN/JUNB/JUND/SLC2A3/TSC22D3 | 6 |
| MeSH_gene2pubmed | B_10_10 | D048370 | MAP Kinase Kinase 2 | 4/41 | 243/26076 | 0.00056832102740453 | 0.00765408502963171 | 0.00475567523173374 | CXCR4/DUSP1/NFKBIA/NR4A1 | 4 |
| MeSH_gene2pubmed | B_10_10 | D007108 | Immune Tolerance | 5/41 | 434/26076 | 0.00057101184992488 | 0.00765520909305693 | 0.00475637364056635 | CD83/FOS/JUN/PPP1R15A/TSC22D3 | 5 |
| MeSH_gene2pubmed | B_10_10 | D008115 | Liver Regeneration | 4/41 | 244/26076 | 0.00057713981106214 | 0.007667341562346 | 0.00476391184839582 | AREG/FOS/JUNB/ZFP36 | 4 |
| MeSH_gene2pubmed | B_10_10 | D016685 | Mitomycin | 4/41 | 244/26076 | 0.00057713981106214 | 0.007667341562346 | 0.00476391184839582 | AREG/CD83/PMAIP1/PPP1R15A | 4 |
| WikiPathways | B_10_10 | WP286 | IL3 signaling | 3/30 | 49/8836 | 0.00058567460146872 | 0.00674780753720451 | 0.00419412598803689 | CD69/FOS/JUN | 3 |
| MeSH_gene2pubmed | B_10_10 | D015291 | Transforming Growth Factors | 3/41 | 104/26076 | 0.00058841751441756 | 0.00775578167307498 | 0.004818861910024 | AREG/FOS/NFKBIA | 3 |