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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_10_10 | WP2873 | Aryl hydrocarbon receptor pathway | 3/30 | 45/8836 | 0.00045522972525811 | 0.00637321615361363 | 0.00396129725838642 | JUN/JUNB/JUND | 3 |
| reactome | B_10_10 | R-HSA-9648895 | Response of EIF2AK1 (HRI) to heme deficiency | 2/24 | 15/11146 | 0.00045866778451483 | 0.0125878825305737 | 0.0087441928509845 | DDIT3/PPP1R15A | 2 |
| MeSH_gene2pubmed | B_10_10 | D014568 | Urokinase-Type Plasminogen Activator | 5/41 | 415/26076 | 0.00046608619236035 | 0.00680810477995031 | 0.00423004645907568 | AREG/FOS/FOSB/NFKBIA/SLC2A3 | 5 |
| GO | B_10_10 | GO:0051412 | response to corticosterone | 2/41 | 15/18986 | 0.00046930753872535 | 0.0137037801307803 | 0.0100777618842076 | FOS/FOSB | 2 |
| GO | B_10_10 | GO:0060211 | regulation of nuclear-transcribed mRNA poly(A) tail shortening | 2/41 | 15/18986 | 0.00046930753872535 | 0.0137037801307803 | 0.0100777618842076 | BTG2/ZFP36 | 2 |
| MeSH_gene2pubmed | B_10_10 | D009061 | Mouth Mucosa | 5/41 | 416/26076 | 0.00047121403082142 | 0.00684893264599846 | 0.00425541383748578 | CD83/DDIT3/FOS/JUN/SLC2A3 | 5 |
| MeSH_gene2pubmed | B_10_10 | D053614 | Janus Kinase 2 | 5/41 | 417/26076 | 0.00047638439011415 | 0.00688997324815355 | 0.00428091339418117 | CXCR4/DDIT3/DUSP1/FOS/NFKBIA | 5 |
| MeSH_gene2pubmed | B_10_10 | D013472 | Sunlight | 3/41 | 97/26076 | 0.00048005635859094 | 0.0069090464157991 | 0.00429276403218838 | DUSP1/NFKBIA/SLC2A3 | 3 |
| MeSH_gene2pubmed | B_10_10 | D015689 | Oncogene Protein p21(ras) | 4/41 | 234/26076 | 0.00049321635479512 | 0.00701560974242652 | 0.00435897450294893 | DDIT3/DUSP1/JUN/JUNB | 4 |
| MeSH_gene2pubmed | B_10_10 | D051997 | ADP-ribosyl Cyclase 1 | 4/41 | 234/26076 | 0.00049321635479512 | 0.00701560974242652 | 0.00435897450294893 | CD69/CD83/CXCR4/DUSP1 | 4 |