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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_10_10 | R-HSA-450341 | Activation of the AP-1 family of transcription factors | 2/24 | 10/11146 | 0.00019786930039479 | 0.00814561953291915 | 0.0056583677130442 | FOS/JUN | 2 |
| MeSH_gene2pubmed | B_10_10 | D014415 | D014415 | 5/41 | 345/26076 | 0.00019959696232698 | 0.00380530312592234 | 0.00236433038764643 | CXCR4/DDIT3/PMAIP1/PPP1R15A/SLC2A3 | 5 |
| MeSH_gene2pubmed | B_10_10 | D053592 | Interleukin-1 Receptor-Associated Kinases | 4/41 | 185/26076 | 0.00020228616805145 | 0.00383169154451007 | 0.00238072617475834 | CD83/DUSP1/NFKBIA/SBDS | 4 |
| GO | B_10_10 | GO:0014075 | response to amine | 3/41 | 53/18986 | 0.00020314034257497 | 0.00836425142071377 | 0.0061510717008854 | FOSB/NR4A1/NR4A2 | 3 |
| GO | B_10_10 | GO:0002286 | T cell activation involved in immune response | 4/41 | 136/18986 | 0.00020767405068553 | 0.00836425142071377 | 0.0061510717008854 | CD69/JUNB/LY9/NFKBID | 4 |
| MeSH_gene2pubmed | B_10_10 | D002762 | Cholecalciferol | 4/41 | 190/26076 | 0.00022398038565491 | 0.00421542571976178 | 0.00261914985384596 | AREG/CD83/FOS/JUN | 4 |
| MeSH_gene2pubmed | B_10_10 | D019309 | Epstein-Barr Virus Nuclear Antigens | 4/41 | 192/26076 | 0.00023311036278845 | 0.00435931226208211 | 0.00270855017574512 | CD83/DDIT3/JUN/NR4A1 | 4 |
| MeSH_gene2pubmed | B_10_10 | D016179 | Granulocyte Colony-Stimulating Factor | 5/41 | 358/26076 | 0.00023683114953687 | 0.00440086237367254 | 0.00273436630344705 | CD69/CD83/CXCR4/SBDS/ZFP36 | 5 |
| MeSH_gene2pubmed | B_10_10 | D006689 | Hodgkin Disease | 5/41 | 359/26076 | 0.00023990005408235 | 0.0044298525709798 | 0.00275237864101104 | CD83/DDIT3/JUN/JUNB/NFKBIA | 5 |
| MeSH_gene2pubmed | B_10_10 | D011070 | Poly I-C | 4/41 | 194/26076 | 0.0002425055615757 | 0.00444997705491425 | 0.00276488248822831 | CD69/CD83/LY9/NFKBIA | 4 |