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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D053221 | TNF-Related Apoptosis-Inducing Ligand | 9/41 | 410/26076 | 1.2082538866199e-08 | 3.54743341111603e-06 | 2.20410945843399e-06 | BTG2/CD83/DDIT3/JUN/KLF6/NFKBIA/NR4A1/PMAIP1/PPP1R15A | 9 |
| MeSH_gene2pubmed | B_10_10 | D051921 | Fos-Related Antigen-2 | 5/41 | 49/26076 | 1.35262817890426e-08 | 3.61028757569356e-06 | 2.24316232922592e-06 | FOS/FOSB/GADD45B/JUN/JUND | 5 |
| WikiPathways | B_10_10 | WP2355 | Corticotropin releasing hormone signaling | 7/30 | 92/8836 | 1.76389224788835e-08 | 3.70417372056554e-06 | 2.3023435656648e-06 | FOS/FOSB/JUNB/JUND/NFKBIA/NR4A1/NR4A2 | 7 |
| MeSH_gene2pubmed | B_10_10 | D051265 | NF-E2-Related Factor 1 | 5/41 | 52/26076 | 1.83718831559962e-08 | 4.49498741216708e-06 | 2.792848553451e-06 | CXCR4/FOS/JUN/JUNB/JUND | 5 |
| MeSH_gene2pubmed | B_10_10 | D041702 | BALB 3T3 Cells | 5/41 | 53/26076 | 2.02622785719434e-08 | 4.57615768363275e-06 | 2.84328168139092e-06 | DUSP1/FOS/JUN/JUNB/JUND | 5 |
| MeSH_gene2pubmed | B_10_10 | D048728 | MAP Kinase Kinase Kinase 1 | 8/41 | 325/26076 | 3.56963579310503e-08 | 7.4860362061117e-06 | 4.65126227778272e-06 | AREG/DDIT3/DUSP1/DUSP2/JUN/JUND/NFKBIA/NR4A1 | 8 |
| MeSH_gene2pubmed | B_10_10 | D051264 | Nuclear Respiratory Factors | 5/41 | 60/26076 | 3.82531126646926e-08 | 7.48740925223584e-06 | 4.65211538581841e-06 | CXCR4/FOS/JUN/JUNB/JUND | 5 |
| KEGG | B_10_10 | hsa04010 | MAPK signaling pathway | 9/23 | 300/8541 | 3.82619478751517e-08 | 2.79833869250462e-06 | 1.76273303464858e-06 | AREG/DDIT3/DUSP1/DUSP2/FOS/GADD45B/JUN/JUND/NR4A1 | 9 |
| KEGG | B_10_10 | hsa04210 | Apoptosis | 7/23 | 136/8541 | 4.40683258662145e-08 | 2.79833869250462e-06 | 1.76273303464858e-06 | DDIT3/FOS/GADD45B/JUN/NFKBIA/PMAIP1/TUBA1A | 7 |
| GO | B_10_10 | GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | 10/40 | 480/18737 | 4.71687317232051e-08 | 3.43076582469123e-06 | 2.41703352754874e-06 | CSRNP1/DDIT3/FOS/FOSB/JUN/JUNB/JUND/KLF6/NR4A1/NR4A2 | 10 |