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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0046631 | alpha-beta T cell activation | 5/41 | 196/18986 | 6.17353421402661e-05 | 0.00322535180945868 | 0.00237192418575909 | CD69/CD83/JUNB/LY9/NFKBID | 5 |
| MeSH_gene2pubmed | B_10_10 | D007476 | Ionophores | 6/41 | 443/26076 | 6.31535151937269e-05 | 0.00170108917989708 | 0.00105692942376368 | AREG/CD83/CXCR4/DDIT3/DUSP1/NFKBIA | 6 |
| GO | B_10_10 | GO:0001975 | response to amphetamine | 3/41 | 36/18986 | 6.35129209054363e-05 | 0.00322535180945868 | 0.00237192418575909 | FOSB/NR4A1/NR4A2 | 3 |
| MeSH_gene2pubmed | B_10_10 | D010281 | Parathyroid Hormone | 5/41 | 271/26076 | 6.4478584513061e-05 | 0.00172099203754861 | 0.00106929556900607 | AREG/DUSP1/FOS/FOSB/JUN | 5 |
| MeSH_gene2pubmed | B_10_10 | D020239 | Receptor Cross-Talk | 6/41 | 447/26076 | 6.63660340714428e-05 | 0.0017554114957996 | 0.00109068124272935 | CXCR4/DUSP1/DUSP2/JUN/NR4A1/NR4A2 | 6 |
| MeSH_gene2pubmed | B_10_10 | D027383 | Papillomaviridae | 6/41 | 451/26076 | 6.97080800826812e-05 | 0.00182636046624264 | 0.00113476361967535 | AREG/CD83/DDIT3/FOS/JUN/PPP1R15A | 6 |
| MeSH_gene2pubmed | B_10_10 | D016166 | Free Radical Scavengers | 5/41 | 276/26076 | 7.02924838846793e-05 | 0.00182636046624264 | 0.00113476361967535 | AREG/BTG2/DDIT3/GADD45B/PMAIP1 | 5 |
| MeSH_gene2pubmed | B_10_10 | D016283 | Proto-Oncogene Proteins p21(ras) | 6/41 | 454/26076 | 7.23019149278834e-05 | 0.00185678014837922 | 0.0011536641320598 | AREG/DDIT3/DUSP1/FOS/JUN/JUNB | 6 |
| MeSH_gene2pubmed | B_10_10 | D020030 | Nitric Oxide Donors | 5/41 | 278/26076 | 7.27281052668973e-05 | 0.00185678014837922 | 0.0011536641320598 | CXCR4/DDIT3/DUSP1/DUSP2/NFKBIA | 5 |
| GO | B_10_10 | GO:2000316 | regulation of T-helper 17 type immune response | 3/41 | 38/18986 | 7.48166045038215e-05 | 0.00364107475251931 | 0.00267764689803151 | CD69/JUNB/NFKBID | 3 |