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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_10 | D011988 | Receptors, Thyroid Hormone | 6/41 | 411/26076 | 4.16798815381077e-05 | 0.00131664751131048 | 0.0008180661613011 | BTG2/DUSP1/FOS/JUN/NR4A1/NR4A2 | 6 |
| MeSH_gene2pubmed | B_10_10 | D012503 | Saponins | 4/41 | 123/26076 | 4.17057965094939e-05 | 0.00131664751131048 | 0.0008180661613011 | DUSP1/FOS/JUN/JUNB | 4 |
| MeSH_gene2pubmed | B_10_10 | D016761 | Oncogene Proteins v-fos | 3/41 | 43/26076 | 4.26189202092084e-05 | 0.00133038373921318 | 0.00082660082462943 | FOS/JUN/JUNB | 3 |
| MeSH_gene2pubmed | B_10_10 | D024721 | E-Box Elements | 4/41 | 124/26076 | 4.30471577742683e-05 | 0.00133038373921318 | 0.00082660082462943 | DDIT3/IFRD1/JUNB/JUND | 4 |
| MeSH_gene2pubmed | B_10_10 | D052002 | NF-kappa B p50 Subunit | 5/41 | 250/26076 | 4.39950543880762e-05 | 0.00134329869601249 | 0.00083462521159818 | CXCR4/DDIT3/JUN/JUND/NFKBIA | 5 |
| GO | B_10_10 | GO:0071248 | cellular response to metal ion | 5/41 | 183/18986 | 4.45488559856757e-05 | 0.00253503781584532 | 0.00186426717531523 | FOS/FOSB/JUNB/JUND/TUBA1A | 5 |
| MeSH_gene2pubmed | B_10_10 | D011719 | Pyrazines | 5/41 | 251/26076 | 4.48376267742589e-05 | 0.00134329869601249 | 0.00083462521159818 | DDIT3/DUSP1/GADD45B/PMAIP1/TUBA1A | 5 |
| MeSH_gene2pubmed | B_10_10 | D051547 | Heme Oxygenase-1 | 5/41 | 251/26076 | 4.48376267742589e-05 | 0.00134329869601249 | 0.00083462521159818 | DDIT3/DUSP1/FOSB/JUNB/JUND | 5 |
| GO | B_10_10 | GO:0002292 | T cell differentiation involved in immune response | 4/41 | 92/18986 | 4.55785908670819e-05 | 0.00253503781584532 | 0.00186426717531523 | CD69/JUNB/LY9/NFKBID | 4 |
| MeSH_gene2pubmed | B_10_10 | D050684 | E2F Transcription Factors | 6/41 | 425/26076 | 5.02009689135885e-05 | 0.00148878833060905 | 0.00092502157498403 | CXCR4/FOS/JUN/NR4A1/PMAIP1/SERTAD1 | 6 |