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Selected Module: B_10_10
Module Info
| Module_Name | B_10_10 |
| Cell_Type | B |
| Name | B_10_10: HALLMARK_TNFA_SIGNALING_VIA_NFKB |
| Meta_Module | B_12 |
| Gene_Number | 41 |
Genes:
ALG13, AREG, BTG2, CCNL1, CD69, CD83, CHMP1B, COQ7, CSRNP1, CXCR4, DDIT3, DUSP1, DUSP2, EIF1, FOS, FOSB, GADD45B, IER2, IFRD1, JUN, JUNB, JUND, KLF6, LY9, MYADM, NFKBIA, NFKBID, NR4A1, NR4A2, PHACTR1, PMAIP1, PPP1R15A, RBM38, SBDS, SERTAD1, SLC2A3, TSC22D3, TUBA1A, YPEL5, ZFP36, ZNF331
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| PSMB5 | 4.90379990902434e-09 | BTG2/CCNL1/DUSP1/EIF1/JUNB/PMAIP1/PPP1R15A/SLC2A3/TUBA1A/ZFP36 |
| CREB | 4.90379990902434e-09 | AREG/CHMP1B/DUSP1/EIF1/FOSB/JUND/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 4.90379990902434e-09 | AREG/DUSP1/FOSB/JUN/JUND/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| CREB | 1.73096420202783e-08 | DUSP1/EIF1/FOS/FOSB/GADD45B/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| SRF | 1.17134429958281e-07 | DUSP2/FOS/FOSB/IER2/IFRD1/JUNB/KLF6/NR4A1 |
| CREB | 3.64129821560901e-07 | DUSP1/EIF1/FOS/FOSB/NFKBID/NR4A2/PPP1R15A/TSC22D3 |
| ATF | 6.82227196758743e-07 | AREG/CHMP1B/DUSP1/FOS/FOSB/JUND/PPP1R15A |
| SRF | 1.34911861648055e-06 | DUSP2/FOS/FOSB/IER2/JUNB/KLF6/NR4A1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_10 | GO:0043370 | regulation of CD4-positive, alpha-beta T cell differentiation | 4/41 | 62/18986 | 9.53506336220539e-06 | 0.0011182053594337 | 0.0008223283825684 | CD69/CD83/JUNB/NFKBID | 4 |
| GO | B_10_10 | GO:0046632 | alpha-beta T cell differentiation | 5/41 | 133/18986 | 9.57367602254877e-06 | 0.0011182053594337 | 0.0008223283825684 | CD69/CD83/JUNB/LY9/NFKBID | 5 |
| MeSH_gene2pubmed | B_10_10 | D007377 | Interleukin-3 | 7/41 | 485/26076 | 9.591793631728e-06 | 0.00041413979562872 | 0.00025731545454775 | AREG/CD69/CD83/CXCR4/MYADM/PMAIP1/ZFP36 | 7 |
| MeSH_gene2pubmed | B_10_10 | D028961 | beta Karyopherins | 5/41 | 183/26076 | 9.84012601831267e-06 | 0.0004187044926053 | 0.00026015161540405 | CXCR4/FOS/JUN/JUNB/JUND | 5 |
| WikiPathways | B_10_10 | WP4919 | Neuroinflammation | 3/30 | 13/8836 | 9.8732171599417e-06 | 0.00041467512071755 | 0.00025774293217532 | FOS/JUN/NFKBIA | 3 |
| MeSH_gene2pubmed | B_10_10 | D011836 | Radiation Tolerance | 6/41 | 324/26076 | 1.09516411738147e-05 | 0.00045934312123314 | 0.00028540141585294 | AREG/DDIT3/DUSP1/DUSP2/GADD45B/PMAIP1 | 6 |
| GO | B_10_10 | GO:0051592 | response to calcium ion | 5/41 | 137/18986 | 1.10573528494302e-05 | 0.00117408982983041 | 0.00086342583015646 | FOS/FOSB/JUNB/JUND/TUBA1A | 5 |
| MeSH_gene2pubmed | B_10_10 | D018259 | Herpesvirus 1, Human | 6/41 | 326/26076 | 1.13406183606564e-05 | 0.00046895852826601 | 0.00029137570969633 | CD83/GADD45B/IFRD1/NFKBIA/PPP1R15A/ZFP36 | 6 |
| MeSH_gene2pubmed | B_10_10 | D002166 | Camptothecin | 6/41 | 336/26076 | 1.34571823628908e-05 | 0.00054875399190899 | 0.000340954635013 | AREG/BTG2/CD83/DDIT3/NR4A1/PMAIP1 | 6 |
| MeSH_gene2pubmed | B_10_10 | D014774 | Virulence | 6/41 | 338/26076 | 1.39165571224951e-05 | 0.00055971248920062 | 0.00034776342456069 | AREG/CD83/CXCR4/KLF6/PMAIP1/PPP1R15A | 6 |