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Selected Module: B_10_1
Module Info
| Module_Name | B_10_1 |
| Cell_Type | B |
| Name | B_10_1: RNA splicing |
| Meta_Module | B_6 |
| Gene_Number | 104 |
Genes:
ACIN1, ADAM17, ANKRD11, ANKRD12, AQR, ARAP2, ATAD2B, ATM, ATRX, BCLAF1, BIRC6, BRAF, CCNL2, CCNT2, CELF2, CENATAC, CEP350, CHD1, CYTH1, DDHD1, DDX3X, DENND4A, DIDO1, DNAJB14, EP300, EPB41, ERBIN, FAM133B, FUS, HELZ, IKBKB, IQGAP1, IREB2, KANSL1, KDM2A, KDM5A, KMT2C, LUC7L3, MAP3K1, MAP3K2, MECP2, MIDEAS, MIER1, NFAT5, NKTR, OSBPL8, PCM1, PHIP, PKN2, PPP4R3A, PRRC2C, PTBP3, PUM2, RAB11FIP1, RAB3GAP1, RAB3GAP2, RAB8B, RBM25, RBM39, RESF1, RLF, RLIM, RNF19A, ROCK1, RSF1, SAFB, SAFB2, SCAF8, SECISBP2, SERINC1, SF3B1, SFT2D2, SLC38A1, SMCHD1, SMG1, SNRNP200, SNX13, SON, SPAG9, SPG7, SREK1, SRSF11, STK17B, THOC1, TRA2A, TRIP12, TRPM7, UBA6, UBXN7, UPF2, USP22, USP47, USP9X, VPS13A, VPS4B, YTHDF3, ZBTB11, ZC3H13, ZFC3H1, ZNF148, ZNF207, ZNF292, ZNF638, ZZEF1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GCCATNTTG | 3.58431928138037e-10 | ATRX/DDX3X/DENND4A/EP300/FUS/KDM2A/LUC7L3/PRRC2C/RBM39/RLIM/SAFB/SCAF8/SNX13/TRA2A/ZBTB11/ZNF207/ZNF638 |
| THRA | 2.91377409546355e-06 | ADAM17/ATM/CCNT2/CEP350/SAFB/SAFB2/UPF2/ZNF292 |
| YY1 | 7.18197029477343e-06 | DENND4A/EP300/KDM2A/LUC7L3/PRRC2C/RBM39/SNX13/ZNF207/ZNF638/ZZEF1 |
| E2F1 | 0.0003548583253826 | ATRX/CCNT2/ERBIN/LUC7L3/PRRC2C/SLC38A1/SMG1/SREK1 |
| SMTTTTGT | 0.00036727922822081 | ATRX/DDX3X/FUS/KDM2A/LUC7L3/SAFB/SLC38A1/ZBTB11/ZNF207/ZNF638 |
| NFMUE1 | 0.00037028470225628 | BCLAF1/EP300/KDM2A/LUC7L3/PRRC2C/SNX13/ZNF207/ZZEF1 |
| YY1 | 0.00037028470225628 | DDX3X/DIDO1/FUS/LUC7L3/PTBP3/RAB8B/RBM39/SNX13 |
| MYB | 0.00037028470225628 | EPB41/LUC7L3/MIDEAS/RBM39/SECISBP2/SF3B1/SPAG9/ZNF148 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_10_1 | GO:0030865 | cortical cytoskeleton organization | 4/102 | 56/18986 | 0.00023271122966177 | 0.0224217269779123 | 0.0200744055481923 | EPB41/IKBKB/IQGAP1/ROCK1 | 4 |
| GO | B_10_1 | GO:0070577 | lysine-acetylated histone binding | 3/102 | 23/18737 | 0.00025626496627478 | 0.00906537318197033 | 0.00748563454118435 | ATAD2B/PHIP/ZZEF1 | 3 |
| GO | B_10_1 | GO:0004709 | MAP kinase kinase kinase activity | 3/102 | 26/18737 | 0.00037178724935291 | 0.0101726491705688 | 0.00839995579641534 | BRAF/MAP3K1/MAP3K2 | 3 |
| GO | B_10_1 | GO:0006401 | RNA catabolic process | 9/102 | 412/18986 | 0.00037792601398604 | 0.0346792109024334 | 0.0310486584923871 | ATM/FUS/IREB2/PUM2/ROCK1/SECISBP2/SMG1/UPF2/YTHDF3 | 9 |
| GO | B_10_1 | GO:0044024 | histone H2AS1 kinase activity | 7/102 | 246/18737 | 0.00039540332465108 | 0.0101726491705688 | 0.00839995579641534 | ATM/BRAF/IKBKB/ROCK1/SMG1/STK17B/TRPM7 | 7 |
| GO | B_10_1 | GO:0140995 | histone H2A kinase activity | 7/102 | 246/18737 | 0.00039540332465108 | 0.0101726491705688 | 0.00839995579641534 | ATM/BRAF/IKBKB/ROCK1/SMG1/STK17B/TRPM7 | 7 |
| GO | B_10_1 | GO:0035173 | histone kinase activity | 7/102 | 256/18737 | 0.00050174496920869 | 0.0118328188571716 | 0.00977082308459028 | ATM/BRAF/IKBKB/ROCK1/SMG1/STK17B/TRPM7 | 7 |
| GO | B_10_1 | GO:0071214 | cellular response to abiotic stimulus | 8/102 | 342/18986 | 0.00051524377746341 | 0.0431684677900867 | 0.0386491785474843 | ATM/DDX3X/EP300/MAP3K1/MAP3K2/NFAT5/USP47/VPS13A | 8 |
| GO | B_10_1 | GO:0104004 | cellular response to environmental stimulus | 8/102 | 342/18986 | 0.00051524377746341 | 0.0431684677900867 | 0.0386491785474843 | ATM/DDX3X/EP300/MAP3K1/MAP3K2/NFAT5/USP47/VPS13A | 8 |
| GO | B_10_1 | GO:0140030 | modification-dependent protein binding | 6/102 | 188/18737 | 0.00057139927512746 | 0.012438922681621 | 0.0102713068079593 | ATAD2B/ATRX/CHD1/EP300/PHIP/ZZEF1 | 6 |