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Selected Module: B_10_1
Module Info
| Module_Name | B_10_1 |
| Cell_Type | B |
| Name | B_10_1: RNA splicing |
| Meta_Module | B_6 |
| Gene_Number | 104 |
Genes:
ACIN1, ADAM17, ANKRD11, ANKRD12, AQR, ARAP2, ATAD2B, ATM, ATRX, BCLAF1, BIRC6, BRAF, CCNL2, CCNT2, CELF2, CENATAC, CEP350, CHD1, CYTH1, DDHD1, DDX3X, DENND4A, DIDO1, DNAJB14, EP300, EPB41, ERBIN, FAM133B, FUS, HELZ, IKBKB, IQGAP1, IREB2, KANSL1, KDM2A, KDM5A, KMT2C, LUC7L3, MAP3K1, MAP3K2, MECP2, MIDEAS, MIER1, NFAT5, NKTR, OSBPL8, PCM1, PHIP, PKN2, PPP4R3A, PRRC2C, PTBP3, PUM2, RAB11FIP1, RAB3GAP1, RAB3GAP2, RAB8B, RBM25, RBM39, RESF1, RLF, RLIM, RNF19A, ROCK1, RSF1, SAFB, SAFB2, SCAF8, SECISBP2, SERINC1, SF3B1, SFT2D2, SLC38A1, SMCHD1, SMG1, SNRNP200, SNX13, SON, SPAG9, SPG7, SREK1, SRSF11, STK17B, THOC1, TRA2A, TRIP12, TRPM7, UBA6, UBXN7, UPF2, USP22, USP47, USP9X, VPS13A, VPS4B, YTHDF3, ZBTB11, ZC3H13, ZFC3H1, ZNF148, ZNF207, ZNF292, ZNF638, ZZEF1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GCCATNTTG | 3.58431928138037e-10 | ATRX/DDX3X/DENND4A/EP300/FUS/KDM2A/LUC7L3/PRRC2C/RBM39/RLIM/SAFB/SCAF8/SNX13/TRA2A/ZBTB11/ZNF207/ZNF638 |
| THRA | 2.91377409546355e-06 | ADAM17/ATM/CCNT2/CEP350/SAFB/SAFB2/UPF2/ZNF292 |
| YY1 | 7.18197029477343e-06 | DENND4A/EP300/KDM2A/LUC7L3/PRRC2C/RBM39/SNX13/ZNF207/ZNF638/ZZEF1 |
| E2F1 | 0.0003548583253826 | ATRX/CCNT2/ERBIN/LUC7L3/PRRC2C/SLC38A1/SMG1/SREK1 |
| SMTTTTGT | 0.00036727922822081 | ATRX/DDX3X/FUS/KDM2A/LUC7L3/SAFB/SLC38A1/ZBTB11/ZNF207/ZNF638 |
| NFMUE1 | 0.00037028470225628 | BCLAF1/EP300/KDM2A/LUC7L3/PRRC2C/SNX13/ZNF207/ZZEF1 |
| YY1 | 0.00037028470225628 | DDX3X/DIDO1/FUS/LUC7L3/PTBP3/RAB8B/RBM39/SNX13 |
| MYB | 0.00037028470225628 | EPB41/LUC7L3/MIDEAS/RBM39/SECISBP2/SF3B1/SPAG9/ZNF148 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_10_1 | D015530 | Nuclear Matrix | 8/104 | 304/26076 | 3.04212729569081e-05 | 0.0105426611502885 | 0.00965653038655538 | ATRX/CCNT2/FUS/IKBKB/MECP2/RSF1/SAFB/THOC1 | 8 |
| GO | B_10_1 | GO:0048024 | regulation of mRNA splicing, via spliceosome | 6/102 | 114/18986 | 3.45973936271645e-05 | 0.0058082965236929 | 0.00520022833547246 | ACIN1/CELF2/RBM25/RBM39/SON/TRA2A | 6 |
| GO | B_10_1 | GO:0034063 | stress granule assembly | 4/102 | 35/18986 | 3.61699835414192e-05 | 0.0058082965236929 | 0.00520022833547246 | DDX3X/PRRC2C/PUM2/YTHDF3 | 4 |
| GO | B_10_1 | GO:0060323 | head morphogenesis | 4/102 | 39/18986 | 5.58895940264641e-05 | 0.00828455751453818 | 0.00741725057565787 | ANKRD11/BRAF/EP300/RAB3GAP1 | 4 |
| MeSH_gene2pubmed | B_10_1 | D051840 | Y-Box-Binding Protein 1 | 6/104 | 171/26076 | 6.49824577898211e-05 | 0.0202680285846452 | 0.0185644621517447 | DDX3X/DENND4A/FUS/IREB2/SAFB/SREK1 | 6 |
| GO | B_10_1 | GO:0042393 | histone binding | 8/102 | 249/18737 | 6.50191153204371e-05 | 0.00460010240892092 | 0.00379848515819396 | ATAD2B/ATRX/CHD1/KDM5A/PHIP/RESF1/RSF1/ZZEF1 | 8 |
| MeSH_gene2pubmed | B_10_1 | D034441 | Heterogeneous-Nuclear Ribonucleoproteins | 9/104 | 450/26076 | 8.09656876483987e-05 | 0.0227708752438663 | 0.0208569397788944 | ACIN1/DDX3X/EP300/EPB41/FUS/MECP2/NFAT5/SAFB/SREK1 | 9 |
| GO | B_10_1 | GO:0030866 | cortical actin cytoskeleton organization | 4/102 | 43/18986 | 8.24869258825291e-05 | 0.0113537361554024 | 0.0101651181595087 | EPB41/IKBKB/IQGAP1/ROCK1 | 4 |
| MeSH_gene2pubmed | B_10_1 | D013012 | Sorbitol | 5/104 | 112/26076 | 8.7608369004936e-05 | 0.0227708752438663 | 0.0208569397788944 | ADAM17/MAP3K1/MAP3K2/NFAT5/ROCK1 | 5 |
| GO | B_10_1 | GO:0030496 | midbody | 7/102 | 207/19960 | 9.36096362526644e-05 | 0.0042124336313699 | 0.00362614169905058 | BIRC6/CELF2/IQGAP1/PKN2/SAFB/STK17B/VPS4B | 7 |