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Selected Module: B_10_1
Module Info
| Module_Name | B_10_1 |
| Cell_Type | B |
| Name | B_10_1: RNA splicing |
| Meta_Module | B_6 |
| Gene_Number | 104 |
Genes:
ACIN1, ADAM17, ANKRD11, ANKRD12, AQR, ARAP2, ATAD2B, ATM, ATRX, BCLAF1, BIRC6, BRAF, CCNL2, CCNT2, CELF2, CENATAC, CEP350, CHD1, CYTH1, DDHD1, DDX3X, DENND4A, DIDO1, DNAJB14, EP300, EPB41, ERBIN, FAM133B, FUS, HELZ, IKBKB, IQGAP1, IREB2, KANSL1, KDM2A, KDM5A, KMT2C, LUC7L3, MAP3K1, MAP3K2, MECP2, MIDEAS, MIER1, NFAT5, NKTR, OSBPL8, PCM1, PHIP, PKN2, PPP4R3A, PRRC2C, PTBP3, PUM2, RAB11FIP1, RAB3GAP1, RAB3GAP2, RAB8B, RBM25, RBM39, RESF1, RLF, RLIM, RNF19A, ROCK1, RSF1, SAFB, SAFB2, SCAF8, SECISBP2, SERINC1, SF3B1, SFT2D2, SLC38A1, SMCHD1, SMG1, SNRNP200, SNX13, SON, SPAG9, SPG7, SREK1, SRSF11, STK17B, THOC1, TRA2A, TRIP12, TRPM7, UBA6, UBXN7, UPF2, USP22, USP47, USP9X, VPS13A, VPS4B, YTHDF3, ZBTB11, ZC3H13, ZFC3H1, ZNF148, ZNF207, ZNF292, ZNF638, ZZEF1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GCCATNTTG | 3.58431928138037e-10 | ATRX/DDX3X/DENND4A/EP300/FUS/KDM2A/LUC7L3/PRRC2C/RBM39/RLIM/SAFB/SCAF8/SNX13/TRA2A/ZBTB11/ZNF207/ZNF638 |
| THRA | 2.91377409546355e-06 | ADAM17/ATM/CCNT2/CEP350/SAFB/SAFB2/UPF2/ZNF292 |
| YY1 | 7.18197029477343e-06 | DENND4A/EP300/KDM2A/LUC7L3/PRRC2C/RBM39/SNX13/ZNF207/ZNF638/ZZEF1 |
| E2F1 | 0.0003548583253826 | ATRX/CCNT2/ERBIN/LUC7L3/PRRC2C/SLC38A1/SMG1/SREK1 |
| SMTTTTGT | 0.00036727922822081 | ATRX/DDX3X/FUS/KDM2A/LUC7L3/SAFB/SLC38A1/ZBTB11/ZNF207/ZNF638 |
| NFMUE1 | 0.00037028470225628 | BCLAF1/EP300/KDM2A/LUC7L3/PRRC2C/SNX13/ZNF207/ZZEF1 |
| YY1 | 0.00037028470225628 | DDX3X/DIDO1/FUS/LUC7L3/PTBP3/RAB8B/RBM39/SNX13 |
| MYB | 0.00037028470225628 | EPB41/LUC7L3/MIDEAS/RBM39/SECISBP2/SF3B1/SPAG9/ZNF148 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| KEGG | B_10_1 | hsa03040 | Spliceosome | 8/39 | 217/8541 | 4.76272048618527e-06 | 0.00064296726563501 | 0.00054645950841494 | ACIN1/AQR/FUS/RBM25/SF3B1/SNRNP200/THOC1/TRA2A | 8 |
| GO | B_10_1 | GO:0036464 | cytoplasmic ribonucleoprotein granule | 9/102 | 258/19960 | 7.04563564317334e-06 | 0.000792634009857 | 0.00068231418860204 | DDX3X/HELZ/IQGAP1/PRRC2C/PUM2/ROCK1/SMG1/UPF2/YTHDF3 | 9 |
| GO | B_10_1 | GO:0140033 | acetylation-dependent protein binding | 4/102 | 24/18737 | 8.08878485980749e-06 | 0.00114456305766276 | 0.00094511065204066 | ATAD2B/EP300/PHIP/ZZEF1 | 4 |
| MeSH_gene2pubmed | B_10_1 | D042002 | Chromatin Assembly and Disassembly | 9/104 | 340/26076 | 9.07984711139809e-06 | 0.00411150355169638 | 0.00376592384175224 | ATM/ATRX/CHD1/DIDO1/EP300/KDM2A/MAP3K1/MECP2/RSF1 | 9 |
| GO | B_10_1 | GO:0045814 | negative regulation of gene expression, epigenetic | 8/102 | 192/18986 | 9.20849557080476e-06 | 0.00177447709649408 | 0.00158870781479463 | ATRX/KDM5A/MECP2/RESF1/RLF/RLIM/SMCHD1/TRIP12 | 8 |
| MeSH_gene2pubmed | B_10_1 | D036961 | Matrix Attachment Region Binding Proteins | 6/104 | 121/26076 | 9.22748472647472e-06 | 0.00411150355169638 | 0.00376592384175224 | DDX3X/EP300/MECP2/SAFB/SAFB2/SREK1 | 6 |
| GO | B_10_1 | GO:0035770 | ribonucleoprotein granule | 9/102 | 277/19960 | 1.24517941221563e-05 | 0.00093388455916172 | 0.00080390530472868 | DDX3X/HELZ/IQGAP1/PRRC2C/PUM2/ROCK1/SMG1/UPF2/YTHDF3 | 9 |
| MeSH_gene2pubmed | B_10_1 | D045325 | HCT116 Cells | 10/104 | 486/26076 | 2.5189865049406e-05 | 0.00982089863613717 | 0.00899543338737999 | ADAM17/ATM/BRAF/CELF2/DDX3X/EP300/IKBKB/THOC1/UPF2/ZNF148 | 10 |
| GO | B_10_1 | GO:0090543 | Flemming body | 4/102 | 34/19960 | 2.64938178138125e-05 | 0.00149027725202696 | 0.00128285854677408 | BIRC6/CELF2/STK17B/VPS4B | 4 |
| GO | B_10_1 | GO:0106310 | protein serine kinase activity | 10/102 | 363/18737 | 2.88422651927277e-05 | 0.00272078701651398 | 0.00224666065711773 | ATM/BRAF/IKBKB/MAP3K1/MAP3K2/PKN2/ROCK1/SMG1/STK17B/TRPM7 | 10 |