Module Explorer

Instructions


  • Enter a module name.
  • Click Submit to search for the detailed information of the module.
  • Results will appear below if available.

Selected Module: B_10_1


Module Info

Module_Name B_10_1
Cell_Type B
Name B_10_1: RNA splicing
Meta_Module B_6
Gene_Number 104

Genes:

ACIN1, ADAM17, ANKRD11, ANKRD12, AQR, ARAP2, ATAD2B, ATM, ATRX, BCLAF1, BIRC6, BRAF, CCNL2, CCNT2, CELF2, CENATAC, CEP350, CHD1, CYTH1, DDHD1, DDX3X, DENND4A, DIDO1, DNAJB14, EP300, EPB41, ERBIN, FAM133B, FUS, HELZ, IKBKB, IQGAP1, IREB2, KANSL1, KDM2A, KDM5A, KMT2C, LUC7L3, MAP3K1, MAP3K2, MECP2, MIDEAS, MIER1, NFAT5, NKTR, OSBPL8, PCM1, PHIP, PKN2, PPP4R3A, PRRC2C, PTBP3, PUM2, RAB11FIP1, RAB3GAP1, RAB3GAP2, RAB8B, RBM25, RBM39, RESF1, RLF, RLIM, RNF19A, ROCK1, RSF1, SAFB, SAFB2, SCAF8, SECISBP2, SERINC1, SF3B1, SFT2D2, SLC38A1, SMCHD1, SMG1, SNRNP200, SNX13, SON, SPAG9, SPG7, SREK1, SRSF11, STK17B, THOC1, TRA2A, TRIP12, TRPM7, UBA6, UBXN7, UPF2, USP22, USP47, USP9X, VPS13A, VPS4B, YTHDF3, ZBTB11, ZC3H13, ZFC3H1, ZNF148, ZNF207, ZNF292, ZNF638, ZZEF1


UMAP Visualizations


UMAP for B_10_1

UMAP for B_10_1


Word Cloud

Enriched TF

Wordcloud for B_10_1
TF p.adjust Genes
GCCATNTTG 3.58431928138037e-10 ATRX/DDX3X/DENND4A/EP300/FUS/KDM2A/LUC7L3/PRRC2C/RBM39/RLIM/SAFB/SCAF8/SNX13/TRA2A/ZBTB11/ZNF207/ZNF638
THRA 2.91377409546355e-06 ADAM17/ATM/CCNT2/CEP350/SAFB/SAFB2/UPF2/ZNF292
YY1 7.18197029477343e-06 DENND4A/EP300/KDM2A/LUC7L3/PRRC2C/RBM39/SNX13/ZNF207/ZNF638/ZZEF1
E2F1 0.0003548583253826 ATRX/CCNT2/ERBIN/LUC7L3/PRRC2C/SLC38A1/SMG1/SREK1
SMTTTTGT 0.00036727922822081 ATRX/DDX3X/FUS/KDM2A/LUC7L3/SAFB/SLC38A1/ZBTB11/ZNF207/ZNF638
NFMUE1 0.00037028470225628 BCLAF1/EP300/KDM2A/LUC7L3/PRRC2C/SNX13/ZNF207/ZZEF1
YY1 0.00037028470225628 DDX3X/DIDO1/FUS/LUC7L3/PTBP3/RAB8B/RBM39/SNX13
MYB 0.00037028470225628 EPB41/LUC7L3/MIDEAS/RBM39/SECISBP2/SF3B1/SPAG9/ZNF148


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
WikiPathways B_10_1 WP3651 Pathways affected in adenoid cystic carcinoma 6/51 65/8836 1.74107823576767e-06 0.00037607289892581 0.0003390520774916 ATM/ATRX/EP300/ERBIN/KANSL1/KMT2C 6
GO B_10_1 GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 11/102 338/18986 2.03566792674963e-06 0.00060381892248769 0.0005406053663766 ACIN1/AQR/CELF2/CENATAC/LUC7L3/RBM25/RBM39/SF3B1/SNRNP200/SON/TRA2A 11
GO B_10_1 GO:0000398 mRNA splicing, via spliceosome 11/102 338/18986 2.03566792674963e-06 0.00060381892248769 0.0005406053663766 ACIN1/AQR/CELF2/CENATAC/LUC7L3/RBM25/RBM39/SF3B1/SNRNP200/SON/TRA2A 11
GO B_10_1 GO:0000375 RNA splicing, via transesterification reactions 11/102 342/18986 2.28068784253352e-06 0.00060381892248769 0.0005406053663766 ACIN1/AQR/CELF2/CENATAC/LUC7L3/RBM25/RBM39/SF3B1/SNRNP200/SON/TRA2A 11
MeSH_gene2pubmed B_10_1 D010769 Phosphothreonine 9/104 287/26076 2.30482916330423e-06 0.00143775243206918 0.00131690659983319 ACIN1/ADAM17/ATM/BRAF/DDX3X/EP300/IKBKB/MAP3K1/ROCK1 9
GO B_10_1 GO:0031507 heterochromatin formation 8/102 161/18986 2.5067729008311e-06 0.00060381892248769 0.0005406053663766 ATRX/KDM5A/MECP2/RESF1/RLF/RLIM/SMCHD1/TRIP12 8
reactome B_10_1 R-HSA-72163 mRNA Splicing - Major Pathway 9/64 207/11146 2.51259222273462e-06 0.00062817124349054 0.00058758467276929 ACIN1/AQR/FUS/LUC7L3/RBM25/RBM39/SF3B1/SNRNP200/SRSF11 9
reactome B_10_1 R-HSA-72172 mRNA Splicing 9/64 215/11146 3.43277392221653e-06 0.00062817124349054 0.00058758467276929 ACIN1/AQR/FUS/LUC7L3/RBM25/RBM39/SF3B1/SNRNP200/SRSF11 9
GO B_10_1 GO:0040029 epigenetic regulation of gene expression 10/102 295/18986 4.25537329400883e-06 0.00091112270417278 0.00081573764080473 ATAD2B/ATRX/EP300/KDM5A/MECP2/RESF1/RLF/RLIM/SMCHD1/TRIP12 10
reactome B_10_1 R-HSA-72203 Processing of Capped Intron-Containing Pre-mRNA 10/64 285/11146 4.56298724085144e-06 0.00062817124349054 0.00058758467276929 ACIN1/AQR/FUS/LUC7L3/RBM25/RBM39/SF3B1/SNRNP200/SRSF11/THOC1 10